miRNA: 3'- -GAGCUcUAGCUGGGc-CGGuu----CUUCCU- -5'
miRNA: 3'- gaGCUCUAGCUGG------G---------------CCGGUUCUUCcu -5'
miRNA: 3'- gAGCUCU---AGCU---------------GGGCCGGuu------CUUCCU- -5'
Results 21 - 23 of 23 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 31842 | 3' | -55.2 | NC_006938.1 | + | 21501 | 0.66 | 0.768154 |
|
Target: 5'- gCUCGAaGUCGGCCCacGCCuccuccGAGGGGc -3' miRNA: 3'- -GAGCUcUAGCUGGGc-CGGuu----CUUCCU- -5' |
|||||||
| 31842 | 3' | -55.2 | NC_006938.1 | + | 19104 | 0.66 | 0.782001 |
|
Target: 5'- -aCGAGAUCGACCucacagUcgagucaagagagcaGGCCGAGAAGa- -3' miRNA: 3'- gaGCUCUAGCUGG------G---------------CCGGUUCUUCcu -5' |
|||||||
| 31842 | 3' | -55.2 | NC_006938.1 | + | 35590 | 0.66 | 0.782001 |
|
Target: 5'- gUCGAGGaucUCGAagaugcgcuggcgcaCCCGGCCcgacacacGGAGGAg -3' miRNA: 3'- gAGCUCU---AGCU---------------GGGCCGGuu------CUUCCU- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home