Results 21 - 29 of 29 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 31842 | 5' | -61.8 | NC_006938.1 | + | 55891 | 0.68 | 0.302354 |
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Target: 5'- gAGCGaggGCUcCGGCCAGGugCccGGACa -3' miRNA: 3'- -UCGCgg-CGA-GCCGGUUCugGucCCUG- -5' |
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| 31842 | 5' | -61.8 | NC_006938.1 | + | 34140 | 0.69 | 0.255218 |
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Target: 5'- cGUGgUGCUCGGCCcgGAGGCCu-GGACc -3' miRNA: 3'- uCGCgGCGAGCCGG--UUCUGGucCCUG- -5' |
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| 31842 | 5' | -61.8 | NC_006938.1 | + | 15554 | 0.71 | 0.193511 |
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Target: 5'- cAGC-CCGCUCcuGGUCGAGGCCAGcGGCc -3' miRNA: 3'- -UCGcGGCGAG--CCGGUUCUGGUCcCUG- -5' |
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| 31842 | 5' | -61.8 | NC_006938.1 | + | 34098 | 0.71 | 0.193511 |
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Target: 5'- cGCGCU-CUacaCGGCCGAGGCCAucaucaacuGGGACa -3' miRNA: 3'- uCGCGGcGA---GCCGGUUCUGGU---------CCCUG- -5' |
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| 31842 | 5' | -61.8 | NC_006938.1 | + | 35022 | 0.72 | 0.174525 |
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Target: 5'- gAGCGCCGaCguucuucgCGGCCAugaucuGGACCAggucggccGGGGCg -3' miRNA: 3'- -UCGCGGC-Ga-------GCCGGU------UCUGGU--------CCCUG- -5' |
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| 31842 | 5' | -61.8 | NC_006938.1 | + | 15461 | 0.72 | 0.170045 |
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Target: 5'- uGgGCCGCU-GGCCucGACCAGGaGCg -3' miRNA: 3'- uCgCGGCGAgCCGGuuCUGGUCCcUG- -5' |
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| 31842 | 5' | -61.8 | NC_006938.1 | + | 29780 | 0.72 | 0.153138 |
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Target: 5'- uGGCaGCCauccgGCUCGGCCGagGGGCCAGcccGGACc -3' miRNA: 3'- -UCG-CGG-----CGAGCCGGU--UCUGGUC---CCUG- -5' |
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| 31842 | 5' | -61.8 | NC_006938.1 | + | 20677 | 0.75 | 0.091977 |
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Target: 5'- uGGCGCCGCcgccgUGGUgAGaACCAGGGACa -3' miRNA: 3'- -UCGCGGCGa----GCCGgUUcUGGUCCCUG- -5' |
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| 31842 | 5' | -61.8 | NC_006938.1 | + | 28516 | 1.09 | 0.00025 |
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Target: 5'- aAGCGCCGCUCGGCCAAGACCAGGGACg -3' miRNA: 3'- -UCGCGGCGAGCCGGUUCUGGUCCCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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