miRNA display CGI


Results 21 - 40 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31843 3' -55.8 NC_006938.1 + 37862 0.67 0.640986
Target:  5'- cGGACCUcGaa-GAuGCGAUCGGCCaGCa -3'
miRNA:   3'- aCUUGGA-CgugCUcCGUUAGCCGG-CG- -5'
31843 3' -55.8 NC_006938.1 + 62304 0.67 0.640986
Target:  5'- gGAACUUGCcaauggGCGGGGCGAaguUCGcuguguagcgcGCCGUg -3'
miRNA:   3'- aCUUGGACG------UGCUCCGUU---AGC-----------CGGCG- -5'
31843 3' -55.8 NC_006938.1 + 15549 0.67 0.630096
Target:  5'- cGcuCCUGguCGAGGCcagCGGCC-Ca -3'
miRNA:   3'- aCuuGGACguGCUCCGuuaGCCGGcG- -5'
31843 3' -55.8 NC_006938.1 + 49693 0.68 0.619208
Target:  5'- cGAACC--UugGAGGCAuccUCGGCgaGCg -3'
miRNA:   3'- aCUUGGacGugCUCCGUu--AGCCGg-CG- -5'
31843 3' -55.8 NC_006938.1 + 17667 0.68 0.608331
Target:  5'- cUGGGCCUGgGcCGAGGgcAUCGacauGCCGCu -3'
miRNA:   3'- -ACUUGGACgU-GCUCCguUAGC----CGGCG- -5'
31843 3' -55.8 NC_006938.1 + 46474 0.68 0.608331
Target:  5'- aGGGCC-GgAUGAGGUAGUCGaUCGCa -3'
miRNA:   3'- aCUUGGaCgUGCUCCGUUAGCcGGCG- -5'
31843 3' -55.8 NC_006938.1 + 24873 0.68 0.608331
Target:  5'- uUGAGCUgcgcCAUGGcGGCGAUCG-CCGCg -3'
miRNA:   3'- -ACUUGGac--GUGCU-CCGUUAGCcGGCG- -5'
31843 3' -55.8 NC_006938.1 + 51386 0.68 0.608331
Target:  5'- -cGGCCUGCACGGucguGGCGAgcuggCGGaaCGCg -3'
miRNA:   3'- acUUGGACGUGCU----CCGUUa----GCCg-GCG- -5'
31843 3' -55.8 NC_006938.1 + 21691 0.68 0.596389
Target:  5'- gGAGCCUGUgggaagaGCGAGaGCuccacggacuGGUCGGCCu- -3'
miRNA:   3'- aCUUGGACG-------UGCUC-CG----------UUAGCCGGcg -5'
31843 3' -55.8 NC_006938.1 + 6138 0.68 0.586645
Target:  5'- gGAGCCacggGCuACGAGGacg-CGGaCCGCu -3'
miRNA:   3'- aCUUGGa---CG-UGCUCCguuaGCC-GGCG- -5'
31843 3' -55.8 NC_006938.1 + 18628 0.68 0.575855
Target:  5'- gGcuCCUGCugGGaGUAGUCgagGGCCGCc -3'
miRNA:   3'- aCuuGGACGugCUcCGUUAG---CCGGCG- -5'
31843 3' -55.8 NC_006938.1 + 14000 0.68 0.565109
Target:  5'- -cGACCUugacacggucgaGCACGucGGCAuAUCGGgCCGCg -3'
miRNA:   3'- acUUGGA------------CGUGCu-CCGU-UAGCC-GGCG- -5'
31843 3' -55.8 NC_006938.1 + 47985 0.69 0.554417
Target:  5'- aUGAACUcGCcggggAUGAGGUugaacguggucgGGUCGGCCGUg -3'
miRNA:   3'- -ACUUGGaCG-----UGCUCCG------------UUAGCCGGCG- -5'
31843 3' -55.8 NC_006938.1 + 29143 0.69 0.543785
Target:  5'- -cGAUCUGCACaagaGGGGCc-UCGGCCGa -3'
miRNA:   3'- acUUGGACGUG----CUCCGuuAGCCGGCg -5'
31843 3' -55.8 NC_006938.1 + 34857 0.69 0.543785
Target:  5'- -cAAUCUGguUGAggguGGCAGUCcgGGCCGCg -3'
miRNA:   3'- acUUGGACguGCU----CCGUUAG--CCGGCG- -5'
31843 3' -55.8 NC_006938.1 + 5985 0.69 0.543785
Target:  5'- cGGACCUaCACGAGGCGuguaGCCGa -3'
miRNA:   3'- aCUUGGAcGUGCUCCGUuagcCGGCg -5'
31843 3' -55.8 NC_006938.1 + 31050 0.69 0.522731
Target:  5'- aUGGACgaGgGCGaAGGCGGcguccuucUUGGCCGCc -3'
miRNA:   3'- -ACUUGgaCgUGC-UCCGUU--------AGCCGGCG- -5'
31843 3' -55.8 NC_006938.1 + 53432 0.69 0.512321
Target:  5'- -cGACCUGCGCGGuGGCAAguUCGacuucGCCGa -3'
miRNA:   3'- acUUGGACGUGCU-CCGUU--AGC-----CGGCg -5'
31843 3' -55.8 NC_006938.1 + 28943 0.69 0.512321
Target:  5'- -cGAUCUGCACGAcucGGCAGUUGGguuugacgccUCGCa -3'
miRNA:   3'- acUUGGACGUGCU---CCGUUAGCC----------GGCG- -5'
31843 3' -55.8 NC_006938.1 + 32913 0.7 0.460691
Target:  5'- cGAGCCacgcgGCcagcuugGCGGGGUuGUCGGCCuGCu -3'
miRNA:   3'- aCUUGGa----CG-------UGCUCCGuUAGCCGG-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.