miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31843 5' -56.6 NC_006938.1 + 37679 0.66 0.708332
Target:  5'- cCAGCGGggCCg---UCUGGgugGCGAUGg -3'
miRNA:   3'- -GUCGCCuaGGagauGGACCa--CGCUGC- -5'
31843 5' -56.6 NC_006938.1 + 50045 0.66 0.676432
Target:  5'- gAGUGGAggUCaCUaCUGCCUGGUcaacuGCGAgGg -3'
miRNA:   3'- gUCGCCU--AG-GA-GAUGGACCA-----CGCUgC- -5'
31843 5' -56.6 NC_006938.1 + 37745 0.66 0.665704
Target:  5'- gAGCGGAagcCCUCguUCUGG-GCGGCa -3'
miRNA:   3'- gUCGCCUa--GGAGauGGACCaCGCUGc -5'
31843 5' -56.6 NC_006938.1 + 26050 0.66 0.654946
Target:  5'- gGGUGGAUCCcgUACC-GGcUGCGugGc -3'
miRNA:   3'- gUCGCCUAGGagAUGGaCC-ACGCugC- -5'
31843 5' -56.6 NC_006938.1 + 30104 0.66 0.654946
Target:  5'- uCGGCGGAggCUgggaguUCUGCCUGG-GCGuucgcGCGg -3'
miRNA:   3'- -GUCGCCUa-GG------AGAUGGACCaCGC-----UGC- -5'
31843 5' -56.6 NC_006938.1 + 19021 0.68 0.594595
Target:  5'- cCAG-GGGUCCUCUgcugACCagacaaaggcggccaUGGUcGCGGCGg -3'
miRNA:   3'- -GUCgCCUAGGAGA----UGG---------------ACCA-CGCUGC- -5'
31843 5' -56.6 NC_006938.1 + 8331 0.68 0.589231
Target:  5'- uGGCGGAUCCUCUuauucGCCgcucgacgcgucuUGuUGCGGCc -3'
miRNA:   3'- gUCGCCUAGGAGA-----UGG-------------ACcACGCUGc -5'
31843 5' -56.6 NC_006938.1 + 8995 0.68 0.579597
Target:  5'- uUAGUGGAUCCcauggCgGCCUGGacGCGGCc -3'
miRNA:   3'- -GUCGCCUAGGa----GaUGGACCa-CGCUGc -5'
31843 5' -56.6 NC_006938.1 + 38738 0.73 0.294636
Target:  5'- uCAGCgGGAUCCUC-ACCUGccagaGCGGCGg -3'
miRNA:   3'- -GUCG-CCUAGGAGaUGGACca---CGCUGC- -5'
31843 5' -56.6 NC_006938.1 + 17525 0.73 0.287483
Target:  5'- aCGGCGGG-CCgaagcaCUACCUcccGGUGCGACa -3'
miRNA:   3'- -GUCGCCUaGGa-----GAUGGA---CCACGCUGc -5'
31843 5' -56.6 NC_006938.1 + 21920 0.75 0.223362
Target:  5'- cCAGCGGAacUCCaacggCUACaUGGUGCGGCa -3'
miRNA:   3'- -GUCGCCU--AGGa----GAUGgACCACGCUGc -5'
31843 5' -56.6 NC_006938.1 + 29283 1.08 0.001144
Target:  5'- cCAGCGGAUCCUCUACCUGGUGCGACGc -3'
miRNA:   3'- -GUCGCCUAGGAGAUGGACCACGCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.