miRNA display CGI


Results 1 - 20 of 30 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31846 3' -56.8 NC_006938.1 + 41860 0.66 0.673568
Target:  5'- gGCauuguAGGGAGGcuGCUGcGACGCGGUg -3'
miRNA:   3'- aCGgu---UUCCUCUc-UGAC-CUGCGCCGa -5'
31846 3' -56.8 NC_006938.1 + 62102 0.66 0.673568
Target:  5'- cGCCAAcucuGGuccgcuuuGGAUUGGACGCGaGCg -3'
miRNA:   3'- aCGGUUu---CCuc------UCUGACCUGCGC-CGa -5'
31846 3' -56.8 NC_006938.1 + 52676 0.66 0.673568
Target:  5'- gGcCCAGAcccguGGGGAGug-GGACGuCGGCUa -3'
miRNA:   3'- aC-GGUUU-----CCUCUCugaCCUGC-GCCGA- -5'
31846 3' -56.8 NC_006938.1 + 13315 0.66 0.662732
Target:  5'- gGCCAccGAGGAGcAGAUgcgccGCGUGGCa -3'
miRNA:   3'- aCGGU--UUCCUC-UCUGacc--UGCGCCGa -5'
31846 3' -56.8 NC_006938.1 + 47848 0.66 0.662732
Target:  5'- gGCCGGAGGAGAGGCcuccaGcACGaGGCc -3'
miRNA:   3'- aCGGUUUCCUCUCUGa----CcUGCgCCGa -5'
31846 3' -56.8 NC_006938.1 + 34517 0.66 0.662732
Target:  5'- aGCCcAAGGAGGGgcgGCUGGuC-UGGCUc -3'
miRNA:   3'- aCGGuUUCCUCUC---UGACCuGcGCCGA- -5'
31846 3' -56.8 NC_006938.1 + 13915 0.66 0.640986
Target:  5'- cGCCAGuGGGAGcAGAC-GGACGacuGGUg -3'
miRNA:   3'- aCGGUU-UCCUC-UCUGaCCUGCg--CCGa -5'
31846 3' -56.8 NC_006938.1 + 45835 0.66 0.630096
Target:  5'- cGCCGAuGGAGAGAC-GGuuGUcuugGGCUc -3'
miRNA:   3'- aCGGUUuCCUCUCUGaCCugCG----CCGA- -5'
31846 3' -56.8 NC_006938.1 + 32112 0.66 0.630096
Target:  5'- cGCCAucGGAGgcaggaagguGGGCUGGGCuccccugccCGGCUc -3'
miRNA:   3'- aCGGUuuCCUC----------UCUGACCUGc--------GCCGA- -5'
31846 3' -56.8 NC_006938.1 + 55613 0.66 0.619208
Target:  5'- cGCCGAGacGGAGAGgucGCcGaGGCGUGGCc -3'
miRNA:   3'- aCGGUUU--CCUCUC---UGaC-CUGCGCCGa -5'
31846 3' -56.8 NC_006938.1 + 36444 0.67 0.597474
Target:  5'- cGUCcuuGGAaAGACcaGGGCGCGGCUg -3'
miRNA:   3'- aCGGuuuCCUcUCUGa-CCUGCGCCGA- -5'
31846 3' -56.8 NC_006938.1 + 8434 0.67 0.597474
Target:  5'- aGCCAacgucAAGGAGAugacgGugUGGGCGaCGGa- -3'
miRNA:   3'- aCGGU-----UUCCUCU-----CugACCUGC-GCCga -5'
31846 3' -56.8 NC_006938.1 + 5059 0.67 0.597474
Target:  5'- cUGCCAu-GGAGAG-CaGGAUGgGGUUg -3'
miRNA:   3'- -ACGGUuuCCUCUCuGaCCUGCgCCGA- -5'
31846 3' -56.8 NC_006938.1 + 18386 0.67 0.597474
Target:  5'- cGCCAGcuugcGGAGGGugUcccacuugcGGAgGCGGCc -3'
miRNA:   3'- aCGGUUu----CCUCUCugA---------CCUgCGCCGa -5'
31846 3' -56.8 NC_006938.1 + 20204 0.67 0.565109
Target:  5'- uUGUCGGAGGcccaGGAGACc--ACGCGGCg -3'
miRNA:   3'- -ACGGUUUCC----UCUCUGaccUGCGCCGa -5'
31846 3' -56.8 NC_006938.1 + 52949 0.67 0.565109
Target:  5'- aGCCcGAGGuguaccgcuugaAGAG-CUGGAaCGUGGCg -3'
miRNA:   3'- aCGGuUUCC------------UCUCuGACCU-GCGCCGa -5'
31846 3' -56.8 NC_006938.1 + 3262 0.68 0.543785
Target:  5'- aGcCCAAGGGAGGGAgCgGGccaaguucaGCGUGGCg -3'
miRNA:   3'- aC-GGUUUCCUCUCU-GaCC---------UGCGCCGa -5'
31846 3' -56.8 NC_006938.1 + 41597 0.68 0.521686
Target:  5'- cGCCAcgucagcAGGGAGcGGCU--GCGCGGCg -3'
miRNA:   3'- aCGGU-------UUCCUCuCUGAccUGCGCCGa -5'
31846 3' -56.8 NC_006938.1 + 23141 0.68 0.50097
Target:  5'- -uCCAGAGGaAGAgggugcaGACUGGugGCGGa- -3'
miRNA:   3'- acGGUUUCC-UCU-------CUGACCugCGCCga -5'
31846 3' -56.8 NC_006938.1 + 42522 0.69 0.460691
Target:  5'- gGCCGAGGGAGuGGCaGGcgucgcuccggccGCGuCGGCg -3'
miRNA:   3'- aCGGUUUCCUCuCUGaCC-------------UGC-GCCGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.