miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31847 3' -56.2 NC_006938.1 + 15453 0.66 0.720337
Target:  5'- -uGCAGaugUGGGCC-GCUGG--CCUCGa -3'
miRNA:   3'- ccCGUCa--ACCUGGuCGACCauGGAGC- -5'
31847 3' -56.2 NC_006938.1 + 55853 0.66 0.709807
Target:  5'- cGGCGGggaGGACCAGCUGccggaCUCc -3'
miRNA:   3'- cCCGUCaa-CCUGGUCGACcaug-GAGc -5'
31847 3' -56.2 NC_006938.1 + 11242 0.66 0.699203
Target:  5'- gGGGCGGU---GCCucagcuGCUGGUcgACCUCc -3'
miRNA:   3'- -CCCGUCAaccUGGu-----CGACCA--UGGAGc -5'
31847 3' -56.2 NC_006938.1 + 62668 0.66 0.677817
Target:  5'- uGGCAG-UGGACac-CUGGUACCacgUCGc -3'
miRNA:   3'- cCCGUCaACCUGgucGACCAUGG---AGC- -5'
31847 3' -56.2 NC_006938.1 + 32605 0.66 0.677817
Target:  5'- uGGaGguGUaccccuccagagUGGGCCAGUUGGUcAgCUCGu -3'
miRNA:   3'- -CC-CguCA------------ACCUGGUCGACCA-UgGAGC- -5'
31847 3' -56.2 NC_006938.1 + 22956 0.67 0.656263
Target:  5'- gGGGCAGUggUGGAUggcaCGGCUGGacaggggcUACgUCa -3'
miRNA:   3'- -CCCGUCA--ACCUG----GUCGACC--------AUGgAGc -5'
31847 3' -56.2 NC_006938.1 + 50306 0.67 0.612973
Target:  5'- uGGCGGUgucgacaaaGCCAGCcGGUGCCUgGg -3'
miRNA:   3'- cCCGUCAacc------UGGUCGaCCAUGGAgC- -5'
31847 3' -56.2 NC_006938.1 + 33190 0.68 0.58064
Target:  5'- cGGuGCAGcccGGACCGGCUGacuCCUCc -3'
miRNA:   3'- -CC-CGUCaa-CCUGGUCGACcauGGAGc -5'
31847 3' -56.2 NC_006938.1 + 51939 0.68 0.559278
Target:  5'- cGGCGG-UGGGCuCGGC-GGUGCCgccCGa -3'
miRNA:   3'- cCCGUCaACCUG-GUCGaCCAUGGa--GC- -5'
31847 3' -56.2 NC_006938.1 + 40882 0.69 0.517285
Target:  5'- cGGGCcuccUUGGACC-GCUGGaggacgGCCUUGa -3'
miRNA:   3'- -CCCGuc--AACCUGGuCGACCa-----UGGAGC- -5'
31847 3' -56.2 NC_006938.1 + 48570 0.7 0.456872
Target:  5'- aGGCAG-UGGGCguGCUcGGUGCaUUCGa -3'
miRNA:   3'- cCCGUCaACCUGguCGA-CCAUG-GAGC- -5'
31847 3' -56.2 NC_006938.1 + 41356 0.7 0.44717
Target:  5'- uGGCGGgacUGGACCugacugugaucGGCaUGGUucGCCUCGa -3'
miRNA:   3'- cCCGUCa--ACCUGG-----------UCG-ACCA--UGGAGC- -5'
31847 3' -56.2 NC_006938.1 + 17194 0.79 0.134352
Target:  5'- cGGCAuggUGGGCCAGCUGGUcugccACCUCc -3'
miRNA:   3'- cCCGUca-ACCUGGUCGACCA-----UGGAGc -5'
31847 3' -56.2 NC_006938.1 + 30140 1.12 0.000641
Target:  5'- cGGGCAGUUGGACCAGCUGGUACCUCGa -3'
miRNA:   3'- -CCCGUCAACCUGGUCGACCAUGGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.