miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31847 5' -59.2 NC_006938.1 + 2438 0.66 0.559317
Target:  5'- cGGCcuUGGUCUGGUUgaccucgucCUCGAcggaguccucCCCGCCg -3'
miRNA:   3'- -CCGu-ACCAGGCCGA---------GAGCU----------GGGUGGg -5'
31847 5' -59.2 NC_006938.1 + 4165 0.69 0.404863
Target:  5'- uGGcCAUGGUCCgGGCggacggCUCcgacaucgaGACCCugCUg -3'
miRNA:   3'- -CC-GUACCAGG-CCGa-----GAG---------CUGGGugGG- -5'
31847 5' -59.2 NC_006938.1 + 4278 0.66 0.549035
Target:  5'- cGGC--GGUCagcaGGgUCUCGAugucggagccgUCCGCCCg -3'
miRNA:   3'- -CCGuaCCAGg---CCgAGAGCU-----------GGGUGGG- -5'
31847 5' -59.2 NC_006938.1 + 5580 0.72 0.25413
Target:  5'- uGGCgcguccugGUGGUCCucGGCguaCUCGGCCCAUgCg -3'
miRNA:   3'- -CCG--------UACCAGG--CCGa--GAGCUGGGUGgG- -5'
31847 5' -59.2 NC_006938.1 + 8553 0.71 0.315524
Target:  5'- cGGCgcucGUGccaGUCCGGCUC-CGucGCCCACaCCg -3'
miRNA:   3'- -CCG----UAC---CAGGCCGAGaGC--UGGGUG-GG- -5'
31847 5' -59.2 NC_006938.1 + 9507 0.66 0.580032
Target:  5'- -aCAgGGUgCCGGg-CUCGGCCCAguCCCa -3'
miRNA:   3'- ccGUaCCA-GGCCgaGAGCUGGGU--GGG- -5'
31847 5' -59.2 NC_006938.1 + 11108 0.68 0.450414
Target:  5'- uGGCAggagGcGagUGGUUCUcgcccgacacCGACCCGCCCg -3'
miRNA:   3'- -CCGUa---C-CagGCCGAGA----------GCUGGGUGGG- -5'
31847 5' -59.2 NC_006938.1 + 13165 0.69 0.422737
Target:  5'- uGGCA-GG-CCGGUUCgcaccCGGCaCCACCg -3'
miRNA:   3'- -CCGUaCCaGGCCGAGa----GCUG-GGUGGg -5'
31847 5' -59.2 NC_006938.1 + 15245 0.7 0.338338
Target:  5'- -cCGUGGUcaCCGGCUCcggagCGACgaCCGCCCc -3'
miRNA:   3'- ccGUACCA--GGCCGAGa----GCUG--GGUGGG- -5'
31847 5' -59.2 NC_006938.1 + 19227 0.69 0.378965
Target:  5'- cGCAUGaUCuCGGCgaucuUCUCGGCCUGCUCu -3'
miRNA:   3'- cCGUACcAG-GCCG-----AGAGCUGGGUGGG- -5'
31847 5' -59.2 NC_006938.1 + 21665 0.68 0.469407
Target:  5'- cGCGcgGGUCCaGCUgUCGggcaACCUGCCCc -3'
miRNA:   3'- cCGUa-CCAGGcCGAgAGC----UGGGUGGG- -5'
31847 5' -59.2 NC_006938.1 + 22216 0.72 0.280121
Target:  5'- cGGCAuccccuccuUGGUCUGaccgaUCUCGACCCGCUg -3'
miRNA:   3'- -CCGU---------ACCAGGCcg---AGAGCUGGGUGGg -5'
31847 5' -59.2 NC_006938.1 + 23701 0.7 0.330602
Target:  5'- cGGCAUGG-CCGaGaugCUCGAgCgCGCCCu -3'
miRNA:   3'- -CCGUACCaGGC-Cga-GAGCUgG-GUGGG- -5'
31847 5' -59.2 NC_006938.1 + 25765 0.69 0.422737
Target:  5'- uGGCAUGaagucccguGUCUcGCUCggcgUGACCCACgCCg -3'
miRNA:   3'- -CCGUAC---------CAGGcCGAGa---GCUGGGUG-GG- -5'
31847 5' -59.2 NC_006938.1 + 29054 0.69 0.387473
Target:  5'- ----cGGaCCGGCUCU-GuCCCGCCCa -3'
miRNA:   3'- ccguaCCaGGCCGAGAgCuGGGUGGG- -5'
31847 5' -59.2 NC_006938.1 + 29637 0.68 0.477119
Target:  5'- uGGCAccagaagccauggUGGaggaggaUCUGGCUCgaCGAgCCGCCCc -3'
miRNA:   3'- -CCGU-------------ACC-------AGGCCGAGa-GCUgGGUGGG- -5'
31847 5' -59.2 NC_006938.1 + 29752 0.66 0.549035
Target:  5'- cGGCA-GGggCGGCUCgUCGAgCCAgauccuccucCCCa -3'
miRNA:   3'- -CCGUaCCagGCCGAG-AGCUgGGU----------GGG- -5'
31847 5' -59.2 NC_006938.1 + 29780 0.66 0.600904
Target:  5'- uGGCAgccaUCCGGCUCggccgaggGGCCaGCCCg -3'
miRNA:   3'- -CCGUacc-AGGCCGAGag------CUGGgUGGG- -5'
31847 5' -59.2 NC_006938.1 + 29887 0.66 0.559317
Target:  5'- uGGaucUGGUCCgGGCUggcccCUCGGCCgAgCCg -3'
miRNA:   3'- -CCgu-ACCAGG-CCGA-----GAGCUGGgUgGG- -5'
31847 5' -59.2 NC_006938.1 + 30177 1.14 0.000254
Target:  5'- cGGCAUGGUCCGGCUCUCGACCCACCCg -3'
miRNA:   3'- -CCGUACCAGGCCGAGAGCUGGGUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.