miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31849 3' -56 NC_006938.1 + 6684 0.66 0.705922
Target:  5'- gGGGCAGcuugaucuuGCGUccguugacagcgacGGUCuGGGAGguGGCc -3'
miRNA:   3'- gUCCGUC---------UGCG--------------CUAGuUCCUCguCCG- -5'
31849 3' -56 NC_006938.1 + 41684 0.66 0.698425
Target:  5'- uCAGGCAGACaCGAUCAcucucaacGGGGCGa-- -3'
miRNA:   3'- -GUCCGUCUGcGCUAGUu-------CCUCGUccg -5'
31849 3' -56 NC_006938.1 + 37927 0.66 0.698425
Target:  5'- gCGGGCGGugGCcagggcGGUgGAGGcgucGGCucuGGCg -3'
miRNA:   3'- -GUCCGUCugCG------CUAgUUCC----UCGu--CCG- -5'
31849 3' -56 NC_006938.1 + 20706 0.66 0.687663
Target:  5'- aCAGGCc-GCGCGAcagauggggcUCGAccGGAGgCAGGUg -3'
miRNA:   3'- -GUCCGucUGCGCU----------AGUU--CCUC-GUCCG- -5'
31849 3' -56 NC_006938.1 + 44243 0.66 0.676847
Target:  5'- -uGGCAG-UGUGAgccaggcccucuUCAAgGGAGguGGCg -3'
miRNA:   3'- guCCGUCuGCGCU------------AGUU-CCUCguCCG- -5'
31849 3' -56 NC_006938.1 + 19811 0.66 0.676847
Target:  5'- uCGGGCagcGGugGCuGGUCcGGGuccGGCGGGUc -3'
miRNA:   3'- -GUCCG---UCugCG-CUAGuUCC---UCGUCCG- -5'
31849 3' -56 NC_006938.1 + 58554 0.66 0.670338
Target:  5'- uGGGUccgucGGACGCGcAUCGGuGGGGCgcucguggauggccuGGGCa -3'
miRNA:   3'- gUCCG-----UCUGCGC-UAGUU-CCUCG---------------UCCG- -5'
31849 3' -56 NC_006938.1 + 41611 0.66 0.665991
Target:  5'- gGGGCuccagaGGACGCcacgucagCAGGGAGC-GGCu -3'
miRNA:   3'- gUCCG------UCUGCGcua-----GUUCCUCGuCCG- -5'
31849 3' -56 NC_006938.1 + 25867 0.67 0.644194
Target:  5'- uCGGGCcu-CGC--UCGGGGAGguGGCc -3'
miRNA:   3'- -GUCCGucuGCGcuAGUUCCUCguCCG- -5'
31849 3' -56 NC_006938.1 + 54688 0.67 0.633274
Target:  5'- -uGG-AGcCGUGGUCuGGGAGuCAGGCg -3'
miRNA:   3'- guCCgUCuGCGCUAGuUCCUC-GUCCG- -5'
31849 3' -56 NC_006938.1 + 554 0.67 0.611441
Target:  5'- gCAaGUAGACGCGAUCGacauguGGGAGgCcGGUg -3'
miRNA:   3'- -GUcCGUCUGCGCUAGU------UCCUC-GuCCG- -5'
31849 3' -56 NC_006938.1 + 56774 0.67 0.611441
Target:  5'- uCAGGCGGugGCagcaugauGAUCAAGuGGaucgaGGGCc -3'
miRNA:   3'- -GUCCGUCugCG--------CUAGUUCcUCg----UCCG- -5'
31849 3' -56 NC_006938.1 + 27454 0.68 0.600547
Target:  5'- -cGGCGGA-GCGGcCGAGGAGCAcgaGGa -3'
miRNA:   3'- guCCGUCUgCGCUaGUUCCUCGU---CCg -5'
31849 3' -56 NC_006938.1 + 10416 0.68 0.578846
Target:  5'- aGGGCgAGGCGUGcuacAUCGAcauGGAGaCGGGCc -3'
miRNA:   3'- gUCCG-UCUGCGC----UAGUU---CCUC-GUCCG- -5'
31849 3' -56 NC_006938.1 + 17229 0.68 0.546639
Target:  5'- aGGGCAaccuGGCGgaGAUCGagaAGGAgucGCAGGCg -3'
miRNA:   3'- gUCCGU----CUGCg-CUAGU---UCCU---CGUCCG- -5'
31849 3' -56 NC_006938.1 + 23894 0.69 0.536026
Target:  5'- -uGGCuucaaGGGCGUGAUCGAcGcGCGGGCg -3'
miRNA:   3'- guCCG-----UCUGCGCUAGUUcCuCGUCCG- -5'
31849 3' -56 NC_006938.1 + 19299 0.69 0.525485
Target:  5'- gCAGGCGGACuacgcaggGCGGagGccGGAGguGGCa -3'
miRNA:   3'- -GUCCGUCUG--------CGCUagUu-CCUCguCCG- -5'
31849 3' -56 NC_006938.1 + 34697 0.69 0.522338
Target:  5'- aGGGCGGAcagcugcuggacucCGUGucCAGGGAGCGGGa -3'
miRNA:   3'- gUCCGUCU--------------GCGCuaGUUCCUCGUCCg -5'
31849 3' -56 NC_006938.1 + 36575 0.7 0.47409
Target:  5'- -cGGUuGACgaaGCGAUCAAGucGCAGGCc -3'
miRNA:   3'- guCCGuCUG---CGCUAGUUCcuCGUCCG- -5'
31849 3' -56 NC_006938.1 + 60144 0.7 0.468089
Target:  5'- aCAGGUGGGCGCGGggCAGacgaccauugucgccGGAGCcGGUg -3'
miRNA:   3'- -GUCCGUCUGCGCUa-GUU---------------CCUCGuCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.