miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31849 5' -60 NC_006938.1 + 6479 0.66 0.541543
Target:  5'- uCCGUCguucagacugauCGCCUUCUggacgaacGCGgagUCCGGCUCg -3'
miRNA:   3'- -GGCAG------------GCGGAGGA--------CGCag-AGGUCGAG- -5'
31849 5' -60 NC_006938.1 + 46155 0.66 0.525253
Target:  5'- gCCGUCUGCCUgggccaccagauucaCCUGgGUgUCCGucguGCUg -3'
miRNA:   3'- -GGCAGGCGGA---------------GGACgCAgAGGU----CGAg -5'
31849 5' -60 NC_006938.1 + 6230 0.66 0.521209
Target:  5'- gCgGUCCGCgUCCUcguagcccGUGgCUCCGGCa- -3'
miRNA:   3'- -GgCAGGCGgAGGA--------CGCaGAGGUCGag -5'
31849 5' -60 NC_006938.1 + 7972 0.66 0.521209
Target:  5'- aCGUCC-CCaUCCUGUG-CUcggcgacccggcCCAGCUCc -3'
miRNA:   3'- gGCAGGcGG-AGGACGCaGA------------GGUCGAG- -5'
31849 5' -60 NC_006938.1 + 51032 0.66 0.521209
Target:  5'- aCCGgg-GCCUCCgccGCGUUUgCCAGCg- -3'
miRNA:   3'- -GGCaggCGGAGGa--CGCAGA-GGUCGag -5'
31849 5' -60 NC_006938.1 + 9153 0.66 0.521209
Target:  5'- uCCGUgUGCaag-UGCGUCgCCAGCUCu -3'
miRNA:   3'- -GGCAgGCGgaggACGCAGaGGUCGAG- -5'
31849 5' -60 NC_006938.1 + 20827 0.66 0.501179
Target:  5'- uUGUCCGCCUCCaucaGCGacaccugcCUCCGGUc- -3'
miRNA:   3'- gGCAGGCGGAGGa---CGCa-------GAGGUCGag -5'
31849 5' -60 NC_006938.1 + 39712 0.66 0.491292
Target:  5'- aCCGUCuCGCCUgCCUGgG-CU-CGGCUg -3'
miRNA:   3'- -GGCAG-GCGGA-GGACgCaGAgGUCGAg -5'
31849 5' -60 NC_006938.1 + 31878 0.67 0.481495
Target:  5'- uUGUgCGCCUCCUGCa---CCAGCg- -3'
miRNA:   3'- gGCAgGCGGAGGACGcagaGGUCGag -5'
31849 5' -60 NC_006938.1 + 16143 0.67 0.475663
Target:  5'- aUCGUCucuCGCCUUCUuguauuugucccagcGCGUCugaaUCCAGUUCa -3'
miRNA:   3'- -GGCAG---GCGGAGGA---------------CGCAG----AGGUCGAG- -5'
31849 5' -60 NC_006938.1 + 4435 0.68 0.428517
Target:  5'- uCCGUCUGCCUUCgcagcucggcgagcGCgGUCUCCAgGCg- -3'
miRNA:   3'- -GGCAGGCGGAGGa-------------CG-CAGAGGU-CGag -5'
31849 5' -60 NC_006938.1 + 23593 0.68 0.415816
Target:  5'- cUCGUauGCCUCCUGgGccgccuUCUgCAGCUCc -3'
miRNA:   3'- -GGCAggCGGAGGACgC------AGAgGUCGAG- -5'
31849 5' -60 NC_006938.1 + 31685 0.69 0.364094
Target:  5'- -gGUCCGCUugucagggaggUCCUGgucUGUCaccUCCAGCUCg -3'
miRNA:   3'- ggCAGGCGG-----------AGGAC---GCAG---AGGUCGAG- -5'
31849 5' -60 NC_006938.1 + 32030 0.7 0.309611
Target:  5'- -gGUCCGCCUUCUugaGCG---CCAGCUCg -3'
miRNA:   3'- ggCAGGCGGAGGA---CGCagaGGUCGAG- -5'
31849 5' -60 NC_006938.1 + 7041 0.7 0.301636
Target:  5'- uCCGaguggcuUCCGCCagCCUggGCGUCgccCCGGCUCc -3'
miRNA:   3'- -GGC-------AGGCGGa-GGA--CGCAGa--GGUCGAG- -5'
31849 5' -60 NC_006938.1 + 24145 0.76 0.120556
Target:  5'- uCCG-CCGCgCUCCuUGCccuUCUCCGGCUCg -3'
miRNA:   3'- -GGCaGGCG-GAGG-ACGc--AGAGGUCGAG- -5'
31849 5' -60 NC_006938.1 + 30806 1.09 0.000419
Target:  5'- uCCGUCCGCCUCCUGCGUCUCCAGCUCc -3'
miRNA:   3'- -GGCAGGCGGAGGACGCAGAGGUCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.