miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31850 5' -58.1 NC_006938.1 + 34130 0.66 0.620205
Target:  5'- gGCCcGGAGgccuGGAC-CCGCUggUCGCUCUg -3'
miRNA:   3'- -CGGuUCUU----CCUGcGGCGGa-AGCGGGA- -5'
31850 5' -58.1 NC_006938.1 + 40867 0.66 0.598816
Target:  5'- aCCucGGAGGACGuuGUCacgGCCCUg -3'
miRNA:   3'- cGGuuCUUCCUGCggCGGaagCGGGA- -5'
31850 5' -58.1 NC_006938.1 + 31151 0.66 0.598816
Target:  5'- aGCCcAGaAAGGucCGCCgggacauaGCCgUCGCCCUu -3'
miRNA:   3'- -CGGuUC-UUCCu-GCGG--------CGGaAGCGGGA- -5'
31850 5' -58.1 NC_006938.1 + 7736 0.66 0.595615
Target:  5'- gGCCGGGcagcccuucucgcuGAGGACcuggGCCGCCUU-GCCa- -3'
miRNA:   3'- -CGGUUC--------------UUCCUG----CGGCGGAAgCGGga -5'
31850 5' -58.1 NC_006938.1 + 28157 0.66 0.588158
Target:  5'- uUCGGGAGgcGGuuGCCGCCccUGCCCUa -3'
miRNA:   3'- cGGUUCUU--CCugCGGCGGaaGCGGGA- -5'
31850 5' -58.1 NC_006938.1 + 30828 0.66 0.577535
Target:  5'- aGCCu-GcAGGACGCCcuCCcacUCGCCCa -3'
miRNA:   3'- -CGGuuCuUCCUGCGGc-GGa--AGCGGGa -5'
31850 5' -58.1 NC_006938.1 + 55613 0.66 0.566955
Target:  5'- cGCCGAGAcGGaGAgGUCGCCgaggcgUgGCCCc -3'
miRNA:   3'- -CGGUUCU-UC-CUgCGGCGGa-----AgCGGGa -5'
31850 5' -58.1 NC_006938.1 + 8797 0.66 0.566955
Target:  5'- aGCUucaGAGAGGGGaugggccgUGUCGCCaaCGCCCUc -3'
miRNA:   3'- -CGG---UUCUUCCU--------GCGGCGGaaGCGGGA- -5'
31850 5' -58.1 NC_006938.1 + 41618 0.67 0.556424
Target:  5'- gGCC-AGggGaGCGCCGCuCUUCaaCCCg -3'
miRNA:   3'- -CGGuUCuuCcUGCGGCG-GAAGc-GGGa -5'
31850 5' -58.1 NC_006938.1 + 6367 0.67 0.545951
Target:  5'- -aCGAGccGGACuCCGCgUUCGUCCa -3'
miRNA:   3'- cgGUUCuuCCUGcGGCGgAAGCGGGa -5'
31850 5' -58.1 NC_006938.1 + 51559 0.67 0.545951
Target:  5'- cGCCAucGAGGGCGCgGuCCgggUUGUCCa -3'
miRNA:   3'- -CGGUucUUCCUGCGgC-GGa--AGCGGGa -5'
31850 5' -58.1 NC_006938.1 + 1453 0.67 0.543864
Target:  5'- uGCCAccgcaggAGAAGGA-GCUGCCUcccgagggcgaggUgGCCCg -3'
miRNA:   3'- -CGGU-------UCUUCCUgCGGCGGA-------------AgCGGGa -5'
31850 5' -58.1 NC_006938.1 + 5493 0.67 0.525204
Target:  5'- cGCCGAGGaccaccAGGACG-CGCCaccCGCCgCUg -3'
miRNA:   3'- -CGGUUCU------UCCUGCgGCGGaa-GCGG-GA- -5'
31850 5' -58.1 NC_006938.1 + 61669 0.67 0.514942
Target:  5'- uCCGAGAAuauuGGAuCGCCGCCUgagCGCg-- -3'
miRNA:   3'- cGGUUCUU----CCU-GCGGCGGAa--GCGgga -5'
31850 5' -58.1 NC_006938.1 + 2301 0.68 0.484671
Target:  5'- gGCC--GGAGcacgucuauGAUGCCGCCcUCGCCCc -3'
miRNA:   3'- -CGGuuCUUC---------CUGCGGCGGaAGCGGGa -5'
31850 5' -58.1 NC_006938.1 + 63343 0.68 0.473785
Target:  5'- uGCCGAagguuccGAAGGGCGgCggcgaGCCggUCGCCCa -3'
miRNA:   3'- -CGGUU-------CUUCCUGCgG-----CGGa-AGCGGGa -5'
31850 5' -58.1 NC_006938.1 + 42872 0.68 0.46011
Target:  5'- cGCCAaugucGGAGgacgcguugaaacGGACGCUGCCcucggugguggcaUCGCCCUg -3'
miRNA:   3'- -CGGU-----UCUU-------------CCUGCGGCGGa------------AGCGGGA- -5'
31850 5' -58.1 NC_006938.1 + 14189 0.69 0.445694
Target:  5'- gGCCAGGuAGG-CGuCCGUCUgguaGCCCa -3'
miRNA:   3'- -CGGUUCuUCCuGC-GGCGGAag--CGGGa -5'
31850 5' -58.1 NC_006938.1 + 30847 0.69 0.436225
Target:  5'- cGCCGAGGucucuGGGGCacugGCCGCCgaCGaCCCc -3'
miRNA:   3'- -CGGUUCU-----UCCUG----CGGCGGaaGC-GGGa -5'
31850 5' -58.1 NC_006938.1 + 34861 0.71 0.340312
Target:  5'- cCCGAGGAGGugGUgGUCa-CGCCCa -3'
miRNA:   3'- cGGUUCUUCCugCGgCGGaaGCGGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.