miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31851 3' -53.9 NC_006938.1 + 60407 0.66 0.844909
Target:  5'- aGUGGAUCUUGGACaggguucaCUGGuCGGAuuGUGAu -3'
miRNA:   3'- -CACUUAGAGCCUG--------GACU-GCCUc-CACU- -5'
31851 3' -53.9 NC_006938.1 + 2997 0.66 0.844909
Target:  5'- -cGGAcCUgaUGGACCUGACGGAccGGUc- -3'
miRNA:   3'- caCUUaGA--GCCUGGACUGCCU--CCAcu -5'
31851 3' -53.9 NC_006938.1 + 53633 0.66 0.827227
Target:  5'- -gGAGUgUCGGGCC-GACcuGGGUGAc -3'
miRNA:   3'- caCUUAgAGCCUGGaCUGccUCCACU- -5'
31851 3' -53.9 NC_006938.1 + 23534 0.66 0.808729
Target:  5'- -cGAuGUCgCGGAUCUGACGGgccAGGUcGAg -3'
miRNA:   3'- caCU-UAGaGCCUGGACUGCC---UCCA-CU- -5'
31851 3' -53.9 NC_006938.1 + 3232 0.68 0.737705
Target:  5'- cGUGg----CGGACCUGACGGAccugaugGGUGu -3'
miRNA:   3'- -CACuuagaGCCUGGACUGCCU-------CCACu -5'
31851 3' -53.9 NC_006938.1 + 46666 0.68 0.728237
Target:  5'- aGUGggUCUCGGACCaGcugcucaagcgaGCGGAGcaGGu -3'
miRNA:   3'- -CACuuAGAGCCUGGaC------------UGCCUCcaCU- -5'
31851 3' -53.9 NC_006938.1 + 23475 0.68 0.706933
Target:  5'- aGUcGGUCUCGGACCgGGCaGAGGa-- -3'
miRNA:   3'- -CAcUUAGAGCCUGGaCUGcCUCCacu -5'
31851 3' -53.9 NC_006938.1 + 40061 0.69 0.630648
Target:  5'- cGUGAAgccgUGGGC--GACGGAGGUGAg -3'
miRNA:   3'- -CACUUaga-GCCUGgaCUGCCUCCACU- -5'
31851 3' -53.9 NC_006938.1 + 7225 0.71 0.543653
Target:  5'- -gGGAgcgCUCGGACCgcuccgGACGGAGcucGUGGa -3'
miRNA:   3'- caCUUa--GAGCCUGGa-----CUGCCUC---CACU- -5'
31851 3' -53.9 NC_006938.1 + 57735 0.77 0.247574
Target:  5'- uGUGAgcuccaucacgGUCggggCGGACCUGACccuGGAGGUGGa -3'
miRNA:   3'- -CACU-----------UAGa---GCCUGGACUG---CCUCCACU- -5'
31851 3' -53.9 NC_006938.1 + 3115 0.88 0.04637
Target:  5'- uUGAcaAUCUCGGACCUGACGGAGGa-- -3'
miRNA:   3'- cACU--UAGAGCCUGGACUGCCUCCacu -5'
31851 3' -53.9 NC_006938.1 + 31320 1.09 0.001729
Target:  5'- uGUGAAUCUCGGACCUGACGGAGGUGAg -3'
miRNA:   3'- -CACUUAGAGCCUGGACUGCCUCCACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.