miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31853 3' -62.9 NC_006938.1 + 49436 0.66 0.364567
Target:  5'- cACCGGCucuCGCGAGGGUcgcauccucuucgGCaagauccaGUCGGCCGc -3'
miRNA:   3'- cUGGCCG---GCGUUCCCG-------------CG--------CAGUCGGU- -5'
31853 3' -62.9 NC_006938.1 + 46970 0.66 0.357251
Target:  5'- cGACC-GCCGaCGaguGGGcGCGCGUCAccgugcGCCAc -3'
miRNA:   3'- -CUGGcCGGC-GU---UCC-CGCGCAGU------CGGU- -5'
31853 3' -62.9 NC_006938.1 + 18266 0.66 0.341364
Target:  5'- -uCCGGCCGCGcGGaGgGCGUCcaCCAg -3'
miRNA:   3'- cuGGCCGGCGUuCC-CgCGCAGucGGU- -5'
31853 3' -62.9 NC_006938.1 + 41974 0.67 0.325995
Target:  5'- cGGCaCGGagCGCAucauGGGCGaCGUCGGCaCGg -3'
miRNA:   3'- -CUG-GCCg-GCGUu---CCCGC-GCAGUCG-GU- -5'
31853 3' -62.9 NC_006938.1 + 29552 0.67 0.318505
Target:  5'- cGACgCGGguguCCGCGAGGGCcuGUGcCAGUCGa -3'
miRNA:   3'- -CUG-GCC----GGCGUUCCCG--CGCaGUCGGU- -5'
31853 3' -62.9 NC_006938.1 + 44409 0.67 0.310416
Target:  5'- gGAaaGGCCGguGGGGCauucagcGCGgCAGCUAa -3'
miRNA:   3'- -CUggCCGGCguUCCCG-------CGCaGUCGGU- -5'
31853 3' -62.9 NC_006938.1 + 29351 0.68 0.263246
Target:  5'- cGCUGGCCGCAAacGGCGCGgccgauuGCCu -3'
miRNA:   3'- cUGGCCGGCGUUc-CCGCGCagu----CGGu -5'
31853 3' -62.9 NC_006938.1 + 24763 0.68 0.256914
Target:  5'- -uCCGGCCcaGCAagaAGGGCGCGgcgaucgCcGCCAu -3'
miRNA:   3'- cuGGCCGG--CGU---UCCCGCGCa------GuCGGU- -5'
31853 3' -62.9 NC_006938.1 + 37847 0.68 0.256914
Target:  5'- cGAUCGGCCaGCAucAGGGCaucguCGUgGGCCu -3'
miRNA:   3'- -CUGGCCGG-CGU--UCCCGc----GCAgUCGGu -5'
31853 3' -62.9 NC_006938.1 + 18825 0.68 0.244625
Target:  5'- --gCGGgCGaCGAGGGCGCG-CGGCUg -3'
miRNA:   3'- cugGCCgGC-GUUCCCGCGCaGUCGGu -5'
31853 3' -62.9 NC_006938.1 + 14031 0.69 0.22096
Target:  5'- -uCgGGCCGCGAGGGgaacaauCGCGUCcgagaGGCCu -3'
miRNA:   3'- cuGgCCGGCGUUCCC-------GCGCAG-----UCGGu -5'
31853 3' -62.9 NC_006938.1 + 41040 0.69 0.21067
Target:  5'- uGACUGGCauucccauCGC-GGGGCGgGUCgAGCCGa -3'
miRNA:   3'- -CUGGCCG--------GCGuUCCCGCgCAG-UCGGU- -5'
31853 3' -62.9 NC_006938.1 + 38578 0.72 0.128801
Target:  5'- -uCCGGCCGUcAGGGCGaugcgGUCAGCg- -3'
miRNA:   3'- cuGGCCGGCGuUCCCGCg----CAGUCGgu -5'
31853 3' -62.9 NC_006938.1 + 47104 0.73 0.109769
Target:  5'- -uUCGGCCGCccAGGGCaGCGUCGuuGCCAc -3'
miRNA:   3'- cuGGCCGGCGu-UCCCG-CGCAGU--CGGU- -5'
31853 3' -62.9 NC_006938.1 + 29756 0.74 0.095955
Target:  5'- --aCGGCgGCAGGGGCGgcuCGUCgAGCCAg -3'
miRNA:   3'- cugGCCGgCGUUCCCGC---GCAG-UCGGU- -5'
31853 3' -62.9 NC_006938.1 + 49466 0.76 0.068091
Target:  5'- cACCGGCuCGCcgucaucgucgaucaGAGGGCGCGUgcccCAGCCGa -3'
miRNA:   3'- cUGGCCG-GCG---------------UUCCCGCGCA----GUCGGU- -5'
31853 3' -62.9 NC_006938.1 + 31705 1.08 0.000259
Target:  5'- aGACCGGCCGCAAGGGCGCGUCAGCCAg -3'
miRNA:   3'- -CUGGCCGGCGUUCCCGCGCAGUCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.