miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31854 3' -61.7 NC_006938.1 + 14364 0.66 0.43492
Target:  5'- gCUCUGcCCCGGCgUUGUGGACCuuGUGaGUg -3'
miRNA:   3'- gGGGAC-GGGCCG-AGCGUCUGG--UAC-CA- -5'
31854 3' -61.7 NC_006938.1 + 27441 0.66 0.432176
Target:  5'- -gUCUGCCUGGguguacucgguCUCGCGGACCAgcgucucgcccgucUGGg -3'
miRNA:   3'- ggGGACGGGCC-----------GAGCGUCUGGU--------------ACCa -5'
31854 3' -61.7 NC_006938.1 + 15269 0.66 0.425812
Target:  5'- cCCUCU-CCCGuggcuGCUCGUAcACCGUGGUc -3'
miRNA:   3'- -GGGGAcGGGC-----CGAGCGUcUGGUACCA- -5'
31854 3' -61.7 NC_006938.1 + 20665 0.66 0.425812
Target:  5'- aCCCUGCUguugUGGCgcCGCc-GCCGUGGUg -3'
miRNA:   3'- gGGGACGG----GCCGa-GCGucUGGUACCA- -5'
31854 3' -61.7 NC_006938.1 + 14642 0.67 0.382037
Target:  5'- aCCUCgagGUCCGGUUCGCcacGGACCAcacgaGGa -3'
miRNA:   3'- -GGGGa--CGGGCCGAGCG---UCUGGUa----CCa -5'
31854 3' -61.7 NC_006938.1 + 15086 0.67 0.373648
Target:  5'- gCCCUGCCCcgaGGuCUCGCGuACCuccgGGa -3'
miRNA:   3'- gGGGACGGG---CC-GAGCGUcUGGua--CCa -5'
31854 3' -61.7 NC_006938.1 + 1811 0.67 0.357251
Target:  5'- aCCCCUGUCCgGGCUU-CAGACCuacaccGGc -3'
miRNA:   3'- -GGGGACGGG-CCGAGcGUCUGGua----CCa -5'
31854 3' -61.7 NC_006938.1 + 29487 0.67 0.349243
Target:  5'- uCUgCUGCCaGGCgCGCAGGCCGUcGUg -3'
miRNA:   3'- -GGgGACGGgCCGaGCGUCUGGUAcCA- -5'
31854 3' -61.7 NC_006938.1 + 12106 0.68 0.341364
Target:  5'- aCCCgaagcGuCCUGGCUCGCAGGCCc---- -3'
miRNA:   3'- gGGGa----C-GGGCCGAGCGUCUGGuacca -5'
31854 3' -61.7 NC_006938.1 + 17230 0.68 0.303915
Target:  5'- gUCCUGUCCGGCga--GGACCuUGGUg -3'
miRNA:   3'- gGGGACGGGCCGagcgUCUGGuACCA- -5'
31854 3' -61.7 NC_006938.1 + 14212 0.7 0.232828
Target:  5'- -aCCUGgaCCCGGUuguguUCGCAGGCCA-GGUa -3'
miRNA:   3'- ggGGAC--GGGCCG-----AGCGUCUGGUaCCA- -5'
31854 3' -61.7 NC_006938.1 + 2184 0.7 0.227111
Target:  5'- aCCCUGUCCGGCUCcacaaAGACCAc--- -3'
miRNA:   3'- gGGGACGGGCCGAGcg---UCUGGUacca -5'
31854 3' -61.7 NC_006938.1 + 23562 0.73 0.139424
Target:  5'- uCCUCUGCCCGGUcCG-AGACCGacUGGUc -3'
miRNA:   3'- -GGGGACGGGCCGaGCgUCUGGU--ACCA- -5'
31854 3' -61.7 NC_006938.1 + 32142 1.07 0.000385
Target:  5'- uCCCCUGCCCGGCUCGCAGACCAUGGUc -3'
miRNA:   3'- -GGGGACGGGCCGAGCGUCUGGUACCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.