miRNA display CGI


Results 1 - 18 of 18 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31855 3' -59.3 NC_006938.1 + 46026 0.66 0.50813
Target:  5'- gGCCGCGUgGGCCGagaUUGAcaGCACGAc -3'
miRNA:   3'- aCGGCGCA-CCGGU---AGUUccCGUGCUa -5'
31855 3' -59.3 NC_006938.1 + 20786 0.66 0.487851
Target:  5'- gGCUGCGaGG-CAUCcAGGuGCACGAg -3'
miRNA:   3'- aCGGCGCaCCgGUAGuUCC-CGUGCUa -5'
31855 3' -59.3 NC_006938.1 + 31039 0.66 0.467961
Target:  5'- gGCCGCGUGGag---AAGGGCgACGGc -3'
miRNA:   3'- aCGGCGCACCgguagUUCCCG-UGCUa -5'
31855 3' -59.3 NC_006938.1 + 35561 0.66 0.467961
Target:  5'- cGCCGCcuuGCCA---AGGGCGCGAc -3'
miRNA:   3'- aCGGCGcacCGGUaguUCCCGUGCUa -5'
31855 3' -59.3 NC_006938.1 + 34110 0.67 0.458174
Target:  5'- gGCCGa--GGCCAUCAucaacugggacaAGGGC-CGAUc -3'
miRNA:   3'- aCGGCgcaCCGGUAGU------------UCCCGuGCUA- -5'
31855 3' -59.3 NC_006938.1 + 11979 0.67 0.438934
Target:  5'- aGCCGCGUGugggaGCUgAUCcAGGGCGuCGAc -3'
miRNA:   3'- aCGGCGCAC-----CGG-UAGuUCCCGU-GCUa -5'
31855 3' -59.3 NC_006938.1 + 26872 0.67 0.429489
Target:  5'- gGCCGCGUuucGCgGUC-GGGGCuACGAg -3'
miRNA:   3'- aCGGCGCAc--CGgUAGuUCCCG-UGCUa -5'
31855 3' -59.3 NC_006938.1 + 36313 0.68 0.366892
Target:  5'- cUGCCaCGUGGCCA-CAAGGGa--GAg -3'
miRNA:   3'- -ACGGcGCACCGGUaGUUCCCgugCUa -5'
31855 3' -59.3 NC_006938.1 + 31710 0.68 0.358476
Target:  5'- gGCCGCaagGGCgCGUCAgccAGGGCAgcCGGUg -3'
miRNA:   3'- aCGGCGca-CCG-GUAGU---UCCCGU--GCUA- -5'
31855 3' -59.3 NC_006938.1 + 18821 0.69 0.342054
Target:  5'- gGUCGCG-GGCgA-CGAGGGCGCGc- -3'
miRNA:   3'- aCGGCGCaCCGgUaGUUCCCGUGCua -5'
31855 3' -59.3 NC_006938.1 + 38595 0.69 0.342054
Target:  5'- aUGuCCGCGUaggacacuccGGCCGUC-AGGGCgauGCGGUc -3'
miRNA:   3'- -AC-GGCGCA----------CCGGUAGuUCCCG---UGCUA- -5'
31855 3' -59.3 NC_006938.1 + 22506 0.69 0.33405
Target:  5'- uUGCCGCGcaugaccagGGCCGUCucgcucuGGGuCGCGGg -3'
miRNA:   3'- -ACGGCGCa--------CCGGUAGuu-----CCC-GUGCUa -5'
31855 3' -59.3 NC_006938.1 + 17282 0.7 0.303412
Target:  5'- cGCCGCGcGGCCAUugcCAAGGccaucCACGAc -3'
miRNA:   3'- aCGGCGCaCCGGUA---GUUCCc----GUGCUa -5'
31855 3' -59.3 NC_006938.1 + 20113 0.71 0.255089
Target:  5'- cGCCGCGUGGUC-UCcuGGGCcucCGAc -3'
miRNA:   3'- aCGGCGCACCGGuAGuuCCCGu--GCUa -5'
31855 3' -59.3 NC_006938.1 + 26812 0.71 0.248725
Target:  5'- cUGCacucuCGUGGCCGUCAAGgcggucaugaacGGCACGAa -3'
miRNA:   3'- -ACGgc---GCACCGGUAGUUC------------CCGUGCUa -5'
31855 3' -59.3 NC_006938.1 + 51554 0.74 0.159494
Target:  5'- -aCCGCc--GCCAUCGAGGGCGCGGUc -3'
miRNA:   3'- acGGCGcacCGGUAGUUCCCGUGCUA- -5'
31855 3' -59.3 NC_006938.1 + 32838 0.76 0.115052
Target:  5'- gGCCGCGUGGC--UCGAGGGCAgcUGGg -3'
miRNA:   3'- aCGGCGCACCGguAGUUCCCGU--GCUa -5'
31855 3' -59.3 NC_006938.1 + 32730 1.05 0.000813
Target:  5'- cUGCCGCGUGGCCAUCAAGGGCACGAUc -3'
miRNA:   3'- -ACGGCGCACCGGUAGUUCCCGUGCUA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.