miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31855 5' -56.6 NC_006938.1 + 2486 0.69 0.459816
Target:  5'- aACGCggaGUaCUUCCUgGAGGCGCAGCUc -3'
miRNA:   3'- -UGUGg--UA-GGAGGAgUUCCGUGUCGGc -5'
31855 5' -56.6 NC_006938.1 + 3309 0.68 0.563163
Target:  5'- -aGCCAUCUUCUgggagCAGGGCAcCGGCa- -3'
miRNA:   3'- ugUGGUAGGAGGa----GUUCCGU-GUCGgc -5'
31855 5' -56.6 NC_006938.1 + 5171 0.68 0.510402
Target:  5'- aACGCCAgaccccucgucUCCUgUUCAguccaggacgagGGGCGCGGCCc -3'
miRNA:   3'- -UGUGGU-----------AGGAgGAGU------------UCCGUGUCGGc -5'
31855 5' -56.6 NC_006938.1 + 9967 0.66 0.649954
Target:  5'- cGCGCCcUUCUCCU--GGGC-CAGCuCGa -3'
miRNA:   3'- -UGUGGuAGGAGGAguUCCGuGUCG-GC- -5'
31855 5' -56.6 NC_006938.1 + 10399 0.67 0.573907
Target:  5'- gGCACCGcCCUCC-C-AGGCGCGGaaGu -3'
miRNA:   3'- -UGUGGUaGGAGGaGuUCCGUGUCggC- -5'
31855 5' -56.6 NC_006938.1 + 11180 0.75 0.201418
Target:  5'- cCGCCAUCCUCCUCGAcGCcgaGGCCu -3'
miRNA:   3'- uGUGGUAGGAGGAGUUcCGug-UCGGc -5'
31855 5' -56.6 NC_006938.1 + 11187 0.67 0.617269
Target:  5'- cCACUcgCCUCCUgcCAAGGCgGCGauguGCCGc -3'
miRNA:   3'- uGUGGuaGGAGGA--GUUCCG-UGU----CGGC- -5'
31855 5' -56.6 NC_006938.1 + 15227 0.69 0.479745
Target:  5'- gACGCCAaucccuUCUUCCaccuguUCGAGGCGCucuggaugcuGGCCGg -3'
miRNA:   3'- -UGUGGU------AGGAGG------AGUUCCGUG----------UCGGC- -5'
31855 5' -56.6 NC_006938.1 + 15623 0.68 0.552473
Target:  5'- cACAuguCCAUCCUCCagGAGuacguggccaGCGCGGUCGg -3'
miRNA:   3'- -UGU---GGUAGGAGGagUUC----------CGUGUCGGC- -5'
31855 5' -56.6 NC_006938.1 + 16145 0.68 0.541846
Target:  5'- -uGCCAcacCCUCCUCAAGaCGCGGCg- -3'
miRNA:   3'- ugUGGUa--GGAGGAGUUCcGUGUCGgc -5'
31855 5' -56.6 NC_006938.1 + 17923 0.66 0.682492
Target:  5'- uCGCUGUCCUUCcgCAugccauAGGCGCGGgCCGc -3'
miRNA:   3'- uGUGGUAGGAGGa-GU------UCCGUGUC-GGC- -5'
31855 5' -56.6 NC_006938.1 + 18013 0.71 0.367416
Target:  5'- aGCuCCAggaUCCUCaggggCAGGGCGCAGUCGu -3'
miRNA:   3'- -UGuGGU---AGGAGga---GUUCCGUGUCGGC- -5'
31855 5' -56.6 NC_006938.1 + 19646 0.68 0.531287
Target:  5'- cCACCAUCUccccgUCCgCGAGGCACAcGCa- -3'
miRNA:   3'- uGUGGUAGG-----AGGaGUUCCGUGU-CGgc -5'
31855 5' -56.6 NC_006938.1 + 20809 0.66 0.649954
Target:  5'- gACACCugCCUCCggUCGAGccccaucugucGCGCGGCCu -3'
miRNA:   3'- -UGUGGuaGGAGG--AGUUC-----------CGUGUCGGc -5'
31855 5' -56.6 NC_006938.1 + 22226 0.68 0.541846
Target:  5'- -aGCC--CCUCCggCGAGGCACcGCCa -3'
miRNA:   3'- ugUGGuaGGAGGa-GUUCCGUGuCGGc -5'
31855 5' -56.6 NC_006938.1 + 23222 0.75 0.204633
Target:  5'- uGCACCcUCUUCCUCuggaucccuggacAGGCGCGGCUGa -3'
miRNA:   3'- -UGUGGuAGGAGGAGu------------UCCGUGUCGGC- -5'
31855 5' -56.6 NC_006938.1 + 24082 0.71 0.350529
Target:  5'- gAUGCCGUCCUCgUCGaaccAGGCACcGuCCGg -3'
miRNA:   3'- -UGUGGUAGGAGgAGU----UCCGUGuC-GGC- -5'
31855 5' -56.6 NC_006938.1 + 24572 0.66 0.64342
Target:  5'- gGCGUCGUCCUCCUCcguGcagucuucgucccagAGGCGguGCCa -3'
miRNA:   3'- -UGUGGUAGGAGGAG---U---------------UCCGUguCGGc -5'
31855 5' -56.6 NC_006938.1 + 29369 0.7 0.430771
Target:  5'- cGCACCAgguagaggaUCCgcuggCCgCAAacGGCGCGGCCGa -3'
miRNA:   3'- -UGUGGU---------AGGa----GGaGUU--CCGUGUCGGC- -5'
31855 5' -56.6 NC_006938.1 + 29784 0.66 0.671679
Target:  5'- -aGCCAUCCggCUCGgccgagGGGC-CAGCCc -3'
miRNA:   3'- ugUGGUAGGagGAGU------UCCGuGUCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.