miRNA display CGI


Results 21 - 35 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31855 5' -56.6 NC_006938.1 + 19646 0.68 0.531287
Target:  5'- cCACCAUCUccccgUCCgCGAGGCACAcGCa- -3'
miRNA:   3'- uGUGGUAGG-----AGGaGUUCCGUGU-CGgc -5'
31855 5' -56.6 NC_006938.1 + 40471 0.68 0.531287
Target:  5'- gACAC--UCCUCCgacggacgacCAGGGC-CAGCCGa -3'
miRNA:   3'- -UGUGguAGGAGGa---------GUUCCGuGUCGGC- -5'
31855 5' -56.6 NC_006938.1 + 5171 0.68 0.510402
Target:  5'- aACGCCAgaccccucgucUCCUgUUCAguccaggacgagGGGCGCGGCCc -3'
miRNA:   3'- -UGUGGU-----------AGGAgGAGU------------UCCGUGUCGGc -5'
31855 5' -56.6 NC_006938.1 + 35788 0.69 0.500088
Target:  5'- cAC-CCGUCC-CUUCGAGGgGCAGaCCa -3'
miRNA:   3'- -UGuGGUAGGaGGAGUUCCgUGUC-GGc -5'
31855 5' -56.6 NC_006938.1 + 53596 0.69 0.479745
Target:  5'- -aGCUGUaCUCC-CAGGGCGCGGUCGa -3'
miRNA:   3'- ugUGGUAgGAGGaGUUCCGUGUCGGC- -5'
31855 5' -56.6 NC_006938.1 + 15227 0.69 0.479745
Target:  5'- gACGCCAaucccuUCUUCCaccuguUCGAGGCGCucuggaugcuGGCCGg -3'
miRNA:   3'- -UGUGGU------AGGAGG------AGUUCCGUG----------UCGGC- -5'
31855 5' -56.6 NC_006938.1 + 2486 0.69 0.459816
Target:  5'- aACGCggaGUaCUUCCUgGAGGCGCAGCUc -3'
miRNA:   3'- -UGUGg--UA-GGAGGAgUUCCGUGUCGGc -5'
31855 5' -56.6 NC_006938.1 + 29369 0.7 0.430771
Target:  5'- cGCACCAgguagaggaUCCgcuggCCgCAAacGGCGCGGCCGa -3'
miRNA:   3'- -UGUGGU---------AGGa----GGaGUU--CCGUGUCGGC- -5'
31855 5' -56.6 NC_006938.1 + 18013 0.71 0.367416
Target:  5'- aGCuCCAggaUCCUCaggggCAGGGCGCAGUCGu -3'
miRNA:   3'- -UGuGGU---AGGAGga---GUUCCGUGUCGGC- -5'
31855 5' -56.6 NC_006938.1 + 34938 0.71 0.350529
Target:  5'- cCACCA-CCUCCUCGGGGU-UGGCCc -3'
miRNA:   3'- uGUGGUaGGAGGAGUUCCGuGUCGGc -5'
31855 5' -56.6 NC_006938.1 + 24082 0.71 0.350529
Target:  5'- gAUGCCGUCCUCgUCGaaccAGGCACcGuCCGg -3'
miRNA:   3'- -UGUGGUAGGAGgAGU----UCCGUGuC-GGC- -5'
31855 5' -56.6 NC_006938.1 + 51437 0.72 0.320765
Target:  5'- aAUGCCAUCCUgCUCAucguggaGGGCuucgacauccucgucGCGGCCGg -3'
miRNA:   3'- -UGUGGUAGGAgGAGU-------UCCG---------------UGUCGGC- -5'
31855 5' -56.6 NC_006938.1 + 23222 0.75 0.204633
Target:  5'- uGCACCcUCUUCCUCuggaucccuggacAGGCGCGGCUGa -3'
miRNA:   3'- -UGUGGuAGGAGGAGu------------UCCGUGUCGGC- -5'
31855 5' -56.6 NC_006938.1 + 11180 0.75 0.201418
Target:  5'- cCGCCAUCCUCCUCGAcGCcgaGGCCu -3'
miRNA:   3'- uGUGGUAGGAGGAGUUcCGug-UCGGc -5'
31855 5' -56.6 NC_006938.1 + 32764 1.09 0.000832
Target:  5'- aACACCAUCCUCCUCAAGGCACAGCCGa -3'
miRNA:   3'- -UGUGGUAGGAGGAGUUCCGUGUCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.