miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31857 3' -55.2 NC_006938.1 + 46488 0.66 0.808921
Target:  5'- ---aUCGGCGGCGggauaGGGCCGGAUgagguagucgaucgcACCGc -3'
miRNA:   3'- gugcAGCCGCUGC-----UCUGGUCUA---------------UGGC- -5'
31857 3' -55.2 NC_006938.1 + 36555 0.66 0.805207
Target:  5'- gACGUCGGCGuuccGCGcggcAGGCCucGAU-CCGg -3'
miRNA:   3'- gUGCAGCCGC----UGC----UCUGGu-CUAuGGC- -5'
31857 3' -55.2 NC_006938.1 + 36623 0.66 0.805207
Target:  5'- gACGUCucGCGACG-GGCCAGGUcGgCGa -3'
miRNA:   3'- gUGCAGc-CGCUGCuCUGGUCUA-UgGC- -5'
31857 3' -55.2 NC_006938.1 + 2450 0.66 0.795801
Target:  5'- cCAUGUCGGCGACGgccuuGGuCUGGuugACCu -3'
miRNA:   3'- -GUGCAGCCGCUGC-----UCuGGUCua-UGGc -5'
31857 3' -55.2 NC_006938.1 + 58768 0.66 0.786232
Target:  5'- gUACGUgGGagaGGUGAGACCAGucACCGc -3'
miRNA:   3'- -GUGCAgCCg--CUGCUCUGGUCuaUGGC- -5'
31857 3' -55.2 NC_006938.1 + 39320 0.66 0.77651
Target:  5'- gGCGaggCGGCGACGuAGGCguGA--CCGa -3'
miRNA:   3'- gUGCa--GCCGCUGC-UCUGguCUauGGC- -5'
31857 3' -55.2 NC_006938.1 + 43449 0.67 0.756648
Target:  5'- aCGCgGUCGGCGAcuaugugauCGAgGGCCGuGUGCCa -3'
miRNA:   3'- -GUG-CAGCCGCU---------GCU-CUGGUcUAUGGc -5'
31857 3' -55.2 NC_006938.1 + 51335 0.67 0.756648
Target:  5'- gCugGUCgcugaaGGCGAUGAGcGCCgAGAUgGCCGu -3'
miRNA:   3'- -GugCAG------CCGCUGCUC-UGG-UCUA-UGGC- -5'
31857 3' -55.2 NC_006938.1 + 34680 0.67 0.746529
Target:  5'- gGCGUCGGCGucCGucGgCAGGUcgaGCCGg -3'
miRNA:   3'- gUGCAGCCGCu-GCucUgGUCUA---UGGC- -5'
31857 3' -55.2 NC_006938.1 + 42493 0.67 0.746529
Target:  5'- cCGCGUCGGCGAagaacucgacgcCGAGgaagcagugcgGCUugacaggcgAGAUGCCGu -3'
miRNA:   3'- -GUGCAGCCGCU------------GCUC-----------UGG---------UCUAUGGC- -5'
31857 3' -55.2 NC_006938.1 + 10777 0.67 0.746529
Target:  5'- gGCGcUCGGUGGCGAggauugccccucGACCAccuUGCCGu -3'
miRNA:   3'- gUGC-AGCCGCUGCU------------CUGGUcu-AUGGC- -5'
31857 3' -55.2 NC_006938.1 + 24334 0.67 0.7363
Target:  5'- cCAUGU-GGCGGuCG-GuCCGGGUGCCGa -3'
miRNA:   3'- -GUGCAgCCGCU-GCuCuGGUCUAUGGC- -5'
31857 3' -55.2 NC_006938.1 + 2645 0.67 0.72597
Target:  5'- uGCGgccuccaCGGCGACGAGGguccgaaCGGAaGCCGg -3'
miRNA:   3'- gUGCa------GCCGCUGCUCUg------GUCUaUGGC- -5'
31857 3' -55.2 NC_006938.1 + 20901 0.67 0.715551
Target:  5'- cCGCG-CGGCGGCGguAGAUCAGGcACUu -3'
miRNA:   3'- -GUGCaGCCGCUGC--UCUGGUCUaUGGc -5'
31857 3' -55.2 NC_006938.1 + 13267 0.67 0.715551
Target:  5'- gCACGaaGGUGuccucuacCGAGACCGGGUcauACCGg -3'
miRNA:   3'- -GUGCagCCGCu-------GCUCUGGUCUA---UGGC- -5'
31857 3' -55.2 NC_006938.1 + 31574 0.67 0.715551
Target:  5'- aCACGUCgagcuggaGGUGAC-AGACCAGG-ACCu -3'
miRNA:   3'- -GUGCAG--------CCGCUGcUCUGGUCUaUGGc -5'
31857 3' -55.2 NC_006938.1 + 30941 0.67 0.705053
Target:  5'- -uCGUCGGCGGCcagugccccaGAGACCucGGcgACCu -3'
miRNA:   3'- guGCAGCCGCUG----------CUCUGG--UCuaUGGc -5'
31857 3' -55.2 NC_006938.1 + 26017 0.68 0.698721
Target:  5'- aACG-CGGCGAUGAagacagcacugcccaGGCCAGGguggaucccgUACCGg -3'
miRNA:   3'- gUGCaGCCGCUGCU---------------CUGGUCU----------AUGGC- -5'
31857 3' -55.2 NC_006938.1 + 37139 0.68 0.694487
Target:  5'- uCugGUcccaCGGUGACaGGGGCCGGGUcaugucccgcgcGCCGg -3'
miRNA:   3'- -GugCA----GCCGCUG-CUCUGGUCUA------------UGGC- -5'
31857 3' -55.2 NC_006938.1 + 27715 0.68 0.694487
Target:  5'- aAgGUCGGUGGCGAGAa-GGGUGuCCa -3'
miRNA:   3'- gUgCAGCCGCUGCUCUggUCUAU-GGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.