miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31860 3' -53.2 NC_006938.1 + 41095 0.66 0.848677
Target:  5'- aGCUGCgC-GUuCGGguUCCUGGCgUCGCUg -3'
miRNA:   3'- -UGACG-GuCAuGUU--AGGACCGaAGCGG- -5'
31860 3' -53.2 NC_006938.1 + 28161 0.66 0.839899
Target:  5'- cUUGCCAGaACGcUCCUgggccagcGGCUugcugUCGCCc -3'
miRNA:   3'- uGACGGUCaUGUuAGGA--------CCGA-----AGCGG- -5'
31860 3' -53.2 NC_006938.1 + 26135 0.66 0.834525
Target:  5'- cGCaGCCGGUACGGgauccacCCUGGCcugggcagugcugucUucaUCGCCg -3'
miRNA:   3'- -UGaCGGUCAUGUUa------GGACCG---------------A---AGCGG- -5'
31860 3' -53.2 NC_006938.1 + 17155 0.66 0.812259
Target:  5'- --cGCCGG-ACAGgaCCUGGagaUCGCCa -3'
miRNA:   3'- ugaCGGUCaUGUUa-GGACCga-AGCGG- -5'
31860 3' -53.2 NC_006938.1 + 51050 0.67 0.802644
Target:  5'- uUUGCCAGcGCcAUCCUGaccaUCGCCa -3'
miRNA:   3'- uGACGGUCaUGuUAGGACcga-AGCGG- -5'
31860 3' -53.2 NC_006938.1 + 23871 0.67 0.782874
Target:  5'- gACgagGCaCAGUGCAacAUCaCUGGCUUCa-- -3'
miRNA:   3'- -UGa--CG-GUCAUGU--UAG-GACCGAAGcgg -5'
31860 3' -53.2 NC_006938.1 + 29360 0.67 0.782874
Target:  5'- gACUGgCGauGUGCAA-CCUGGCcaaccugCGCCu -3'
miRNA:   3'- -UGACgGU--CAUGUUaGGACCGaa-----GCGG- -5'
31860 3' -53.2 NC_006938.1 + 25576 0.67 0.781868
Target:  5'- gUUGCCGucGCGGUCgcgguacuugaagCUGuGCUUCGCCa -3'
miRNA:   3'- uGACGGUcaUGUUAG-------------GAC-CGAAGCGG- -5'
31860 3' -53.2 NC_006938.1 + 41124 0.67 0.772743
Target:  5'- uCUGCCAucGCAacgaccAUCCccgcUGGCUccuUCGCCg -3'
miRNA:   3'- uGACGGUcaUGU------UAGG----ACCGA---AGCGG- -5'
31860 3' -53.2 NC_006938.1 + 1812 0.67 0.772743
Target:  5'- cACcgGCCGGaGCuGUCCaUGGCgUCGUCg -3'
miRNA:   3'- -UGa-CGGUCaUGuUAGG-ACCGaAGCGG- -5'
31860 3' -53.2 NC_006938.1 + 37242 0.69 0.680702
Target:  5'- --cGCUAGUggcgcgacucguuccACAAUCuCUGGCacUCGCCg -3'
miRNA:   3'- ugaCGGUCA---------------UGUUAG-GACCGa-AGCGG- -5'
31860 3' -53.2 NC_006938.1 + 3402 0.69 0.675171
Target:  5'- cUUGCCGGUGCccugcUCCcagaagaUGGCU-CGCCa -3'
miRNA:   3'- uGACGGUCAUGuu---AGG-------ACCGAaGCGG- -5'
31860 3' -53.2 NC_006938.1 + 46395 0.69 0.654069
Target:  5'- cCUGCCAcuuggaucgaucGUGgGGUCCUGGaagagcucgUUCGCCa -3'
miRNA:   3'- uGACGGU------------CAUgUUAGGACCg--------AAGCGG- -5'
31860 3' -53.2 NC_006938.1 + 39072 0.69 0.654069
Target:  5'- cGCUGgCAuGUACGAgaCCUGGCUcuUCgGCCc -3'
miRNA:   3'- -UGACgGU-CAUGUUa-GGACCGA--AG-CGG- -5'
31860 3' -53.2 NC_006938.1 + 22242 0.7 0.630662
Target:  5'- cACcGCCAcaggcGUACAA-CCUguggaagGGCUUCGCCu -3'
miRNA:   3'- -UGaCGGU-----CAUGUUaGGA-------CCGAAGCGG- -5'
31860 3' -53.2 NC_006938.1 + 5596 0.7 0.620627
Target:  5'- uGCUGCCAGcgGCGgguggcgcGUCCUGGUgguccUCGgCg -3'
miRNA:   3'- -UGACGGUCa-UGU--------UAGGACCGa----AGCgG- -5'
31860 3' -53.2 NC_006938.1 + 51487 0.74 0.365066
Target:  5'- --aGCCGGgGCAGUCgaGGCgaucgUCGCCg -3'
miRNA:   3'- ugaCGGUCaUGUUAGgaCCGa----AGCGG- -5'
31860 3' -53.2 NC_006938.1 + 63607 0.76 0.284253
Target:  5'- aGCUGCCAGUGCGGUCCgucCUUgaacgugCGCCa -3'
miRNA:   3'- -UGACGGUCAUGUUAGGaccGAA-------GCGG- -5'
31860 3' -53.2 NC_006938.1 + 35284 1.13 0.000936
Target:  5'- gACUGCCAGUACAAUCCUGGCUUCGCCa -3'
miRNA:   3'- -UGACGGUCAUGUUAGGACCGAAGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.