miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31862 5' -58.1 NC_006938.1 + 2329 0.66 0.620205
Target:  5'- -cGGCGGGGaggaCuCCGUCGAGGAcgaGGUCa -3'
miRNA:   3'- acCUGCUCCg---GcGGUAGCUCCU---CUAG- -5'
31862 5' -58.1 NC_006938.1 + 58002 0.66 0.597749
Target:  5'- gGGACGccAGGCCaGCCGUaucgucgaugucgCGuAGGAGAg- -3'
miRNA:   3'- aCCUGC--UCCGG-CGGUA-------------GC-UCCUCUag -5'
31862 5' -58.1 NC_006938.1 + 52223 0.66 0.588158
Target:  5'- uUGGugGAGGCggaggGCUcuuugGUgGAGGAGGUg -3'
miRNA:   3'- -ACCugCUCCGg----CGG-----UAgCUCCUCUAg -5'
31862 5' -58.1 NC_006938.1 + 2753 0.66 0.588158
Target:  5'- cUGGACGGGGUCuaC-UCGGcGGGAUCc -3'
miRNA:   3'- -ACCUGCUCCGGcgGuAGCUcCUCUAG- -5'
31862 5' -58.1 NC_006938.1 + 26389 0.66 0.588158
Target:  5'- aGGGCGAgaGGCCGCCc-----GAGAUCa -3'
miRNA:   3'- aCCUGCU--CCGGCGGuagcucCUCUAG- -5'
31862 5' -58.1 NC_006938.1 + 47842 0.66 0.588158
Target:  5'- aGGA-GAGGCCuCCAgcaCGAGGccagAGGUCu -3'
miRNA:   3'- aCCUgCUCCGGcGGUa--GCUCC----UCUAG- -5'
31862 5' -58.1 NC_006938.1 + 57749 0.66 0.577535
Target:  5'- cGGuCGGGGCgGaCCugacccuggagGUgGAGGGGAUCu -3'
miRNA:   3'- aCCuGCUCCGgC-GG-----------UAgCUCCUCUAG- -5'
31862 5' -58.1 NC_006938.1 + 5045 0.66 0.571181
Target:  5'- aGGAUGGGGuuGCCAaugcagaugauguggUCGucgucGGAGAa- -3'
miRNA:   3'- aCCUGCUCCggCGGU---------------AGCu----CCUCUag -5'
31862 5' -58.1 NC_006938.1 + 22608 0.66 0.571181
Target:  5'- aGcACGAGGCCacgcugaagaugaucGUCAcCGAGGAGAUg -3'
miRNA:   3'- aCcUGCUCCGG---------------CGGUaGCUCCUCUAg -5'
31862 5' -58.1 NC_006938.1 + 11212 0.66 0.566955
Target:  5'- cGGGCG-GGUCGgUGUCGGGcGAGAa- -3'
miRNA:   3'- aCCUGCuCCGGCgGUAGCUC-CUCUag -5'
31862 5' -58.1 NC_006938.1 + 24398 0.67 0.556424
Target:  5'- aGGAUGcGGCCGUCGagcaccUCGuGGAGGc- -3'
miRNA:   3'- aCCUGCuCCGGCGGU------AGCuCCUCUag -5'
31862 5' -58.1 NC_006938.1 + 42614 0.67 0.545951
Target:  5'- gUGGuCGGGGCgGUggCGUCGAuGGAGuUCg -3'
miRNA:   3'- -ACCuGCUCCGgCG--GUAGCU-CCUCuAG- -5'
31862 5' -58.1 NC_006938.1 + 51532 0.67 0.535542
Target:  5'- cGGcgcguucauCGAGaucgcaaccGCCGCCAUCGAGGGcgcGGUCc -3'
miRNA:   3'- aCCu--------GCUC---------CGGCGGUAGCUCCU---CUAG- -5'
31862 5' -58.1 NC_006938.1 + 1336 0.67 0.525204
Target:  5'- uUGGcaGCaAGGCCGCCGUCGccAGaGAGcUCg -3'
miRNA:   3'- -ACC--UGcUCCGGCGGUAGC--UC-CUCuAG- -5'
31862 5' -58.1 NC_006938.1 + 15647 0.67 0.514942
Target:  5'- gUGGccaGCGcGGUCGgCGUCGAGGucGGUCg -3'
miRNA:   3'- -ACC---UGCuCCGGCgGUAGCUCCu-CUAG- -5'
31862 5' -58.1 NC_006938.1 + 46575 0.67 0.508824
Target:  5'- aGaGGCGAcacGGCCccgcgcuccccagcuGCCGaCGAGGAGGUCc -3'
miRNA:   3'- aC-CUGCU---CCGG---------------CGGUaGCUCCUCUAG- -5'
31862 5' -58.1 NC_006938.1 + 50851 0.67 0.504762
Target:  5'- gGGGCGAGcuCCGCCAgcUCGgcaccgacGGaGAGAUCa -3'
miRNA:   3'- aCCUGCUCc-GGCGGU--AGC--------UC-CUCUAG- -5'
31862 5' -58.1 NC_006938.1 + 34845 0.68 0.484671
Target:  5'- gUGGAuCGGGGCCaaCccCGAGGAGGUg -3'
miRNA:   3'- -ACCU-GCUCCGGcgGuaGCUCCUCUAg -5'
31862 5' -58.1 NC_006938.1 + 53778 0.68 0.484671
Target:  5'- aGGGCGuacgcgguguuGGCCGCCAUgaCGguuGGaGAGAUCg -3'
miRNA:   3'- aCCUGCu----------CCGGCGGUA--GC---UC-CUCUAG- -5'
31862 5' -58.1 NC_006938.1 + 33828 0.69 0.445694
Target:  5'- cGGACaucguGAGGgaCGCUGUCGAGGcgauGAUCg -3'
miRNA:   3'- aCCUG-----CUCCg-GCGGUAGCUCCu---CUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.