miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31862 5' -58.1 NC_006938.1 + 37541 1.1 0.000559
Target:  5'- cUGGACGAGGCCGCCAUCGAGGAGAUCg -3'
miRNA:   3'- -ACCUGCUCCGGCGGUAGCUCCUCUAG- -5'
31862 5' -58.1 NC_006938.1 + 51635 0.75 0.172599
Target:  5'- gUGGACGGGGCgGUCggCGAGGucaacuucucggGGAUCa -3'
miRNA:   3'- -ACCUGCUCCGgCGGuaGCUCC------------UCUAG- -5'
31862 5' -58.1 NC_006938.1 + 2453 0.75 0.191745
Target:  5'- cUGGACGAGGCCGaCUAUCGcaAGGAc--- -3'
miRNA:   3'- -ACCUGCUCCGGC-GGUAGC--UCCUcuag -5'
31862 5' -58.1 NC_006938.1 + 8975 0.73 0.239877
Target:  5'- cUGGACGcGGcCCGCUggcaugaagcgcauGUCGAGGAGgAUCu -3'
miRNA:   3'- -ACCUGCuCC-GGCGG--------------UAGCUCCUC-UAG- -5'
31862 5' -58.1 NC_006938.1 + 14534 0.73 0.241704
Target:  5'- gGGACGAGuguGCCGCCAUUGGcucGGcGGUCu -3'
miRNA:   3'- aCCUGCUC---CGGCGGUAGCU---CCuCUAG- -5'
31862 5' -58.1 NC_006938.1 + 27167 0.73 0.254186
Target:  5'- -aGACGAuGGCgCGCCAcgUCGAGGcGGUCa -3'
miRNA:   3'- acCUGCU-CCG-GCGGU--AGCUCCuCUAG- -5'
31862 5' -58.1 NC_006938.1 + 1067 0.72 0.294808
Target:  5'- aUGGAaGAGGCCGUCAaCGAGGcccucaucaAGAUUg -3'
miRNA:   3'- -ACCUgCUCCGGCGGUaGCUCC---------UCUAG- -5'
31862 5' -58.1 NC_006938.1 + 48485 0.71 0.302051
Target:  5'- aGGcCGuGGCCGCCucgAUCGuGGAGAc- -3'
miRNA:   3'- aCCuGCuCCGGCGG---UAGCuCCUCUag -5'
31862 5' -58.1 NC_006938.1 + 38499 0.71 0.30943
Target:  5'- gGGACGuugaaggucAGGCCGCCAccggaGAGGAG-UCc -3'
miRNA:   3'- aCCUGC---------UCCGGCGGUag---CUCCUCuAG- -5'
31862 5' -58.1 NC_006938.1 + 53127 0.71 0.316945
Target:  5'- cGGACGcaguuGGCgCGCCGaacauccccaUCGuGGAGAUCc -3'
miRNA:   3'- aCCUGCu----CCG-GCGGU----------AGCuCCUCUAG- -5'
31862 5' -58.1 NC_006938.1 + 8046 0.71 0.340312
Target:  5'- aGGAUGGGGaCGUCGaaggaGAGGAGGUCu -3'
miRNA:   3'- aCCUGCUCCgGCGGUag---CUCCUCUAG- -5'
31862 5' -58.1 NC_006938.1 + 10416 0.71 0.340312
Target:  5'- aGGGCGAGGCgUGCuaCAUCGAcauGGAGAc- -3'
miRNA:   3'- aCCUGCUCCG-GCG--GUAGCU---CCUCUag -5'
31862 5' -58.1 NC_006938.1 + 8184 0.7 0.356569
Target:  5'- cGGACGcGGGUCGCCAUCucgaugauGGGGuuGUCc -3'
miRNA:   3'- aCCUGC-UCCGGCGGUAG--------CUCCucUAG- -5'
31862 5' -58.1 NC_006938.1 + 29496 0.7 0.373365
Target:  5'- aGGcGCGcAGGCCGUCGU-GAGGAGGa- -3'
miRNA:   3'- aCC-UGC-UCCGGCGGUAgCUCCUCUag -5'
31862 5' -58.1 NC_006938.1 + 50073 0.69 0.435284
Target:  5'- uUGGAcCGAGcGCgGCCGgagUCGAcaggaguGGAGGUCa -3'
miRNA:   3'- -ACCU-GCUC-CGgCGGU---AGCU-------CCUCUAG- -5'
31862 5' -58.1 NC_006938.1 + 15954 0.69 0.436225
Target:  5'- gGGGCGAGGCCcgaucGCCGacgCGGucGAGAUCc -3'
miRNA:   3'- aCCUGCUCCGG-----CGGUa--GCUc-CUCUAG- -5'
31862 5' -58.1 NC_006938.1 + 33828 0.69 0.445694
Target:  5'- cGGACaucguGAGGgaCGCUGUCGAGGcgauGAUCg -3'
miRNA:   3'- aCCUG-----CUCCg-GCGGUAGCUCCu---CUAG- -5'
31862 5' -58.1 NC_006938.1 + 34845 0.68 0.484671
Target:  5'- gUGGAuCGGGGCCaaCccCGAGGAGGUg -3'
miRNA:   3'- -ACCU-GCUCCGGcgGuaGCUCCUCUAg -5'
31862 5' -58.1 NC_006938.1 + 53778 0.68 0.484671
Target:  5'- aGGGCGuacgcgguguuGGCCGCCAUgaCGguuGGaGAGAUCg -3'
miRNA:   3'- aCCUGCu----------CCGGCGGUA--GC---UC-CUCUAG- -5'
31862 5' -58.1 NC_006938.1 + 50851 0.67 0.504762
Target:  5'- gGGGCGAGcuCCGCCAgcUCGgcaccgacGGaGAGAUCa -3'
miRNA:   3'- aCCUGCUCc-GGCGGU--AGC--------UC-CUCUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.