Results 1 - 20 of 20 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31863 | 5' | -52.2 | NC_006938.1 | + | 34725 | 0.81 | 0.139187 |
Target: 5'- cAGGGAGcGGGAGUCAGGcGAGGCa -3' miRNA: 3'- cUCCCUC-CUCUCGGUCCuCUUCG- -5' |
|||||||
31863 | 5' | -52.2 | NC_006938.1 | + | 19313 | 0.66 | 0.839723 |
Target: 5'- cAGGGcGGAG-GCC-GGAGGuGGCa -3' miRNA: 3'- cUCCCuCCUCuCGGuCCUCU-UCG- -5' |
|||||||
31863 | 5' | -52.2 | NC_006938.1 | + | 11582 | 0.66 | 0.830426 |
Target: 5'- cAGGuGGcGGAGGccuuuggcuuccGUCGGGAGAAGCu -3' miRNA: 3'- cUCC-CU-CCUCU------------CGGUCCUCUUCG- -5' |
|||||||
31863 | 5' | -52.2 | NC_006938.1 | + | 35021 | 0.66 | 0.8209 |
Target: 5'- cGA-GGAGGAGAuccgcaagauCCAGGAGGAGg -3' miRNA: 3'- -CUcCCUCCUCUc---------GGUCCUCUUCg -5' |
|||||||
31863 | 5' | -52.2 | NC_006938.1 | + | 18716 | 0.66 | 0.811157 |
Target: 5'- -uGGGcucugcuacGGGAuGGGaCAGGAGAAGCu -3' miRNA: 3'- cuCCC---------UCCU-CUCgGUCCUCUUCG- -5' |
|||||||
31863 | 5' | -52.2 | NC_006938.1 | + | 17936 | 0.67 | 0.780745 |
Target: 5'- uGAGGauccuGGAGcuCCAGGAGAAGg -3' miRNA: 3'- -CUCCcu---CCUCucGGUCCUCUUCg -5' |
|||||||
31863 | 5' | -52.2 | NC_006938.1 | + | 4277 | 0.67 | 0.748818 |
Target: 5'- gGAGGacguGAacGGAGAGCC-GGuGGAGCg -3' miRNA: 3'- -CUCC----CU--CCUCUCGGuCCuCUUCG- -5' |
|||||||
31863 | 5' | -52.2 | NC_006938.1 | + | 34202 | 0.68 | 0.737899 |
Target: 5'- aGAGGGAcaaGGAcuucGAGUggguguggCAGGAGAAGUa -3' miRNA: 3'- -CUCCCU---CCU----CUCG--------GUCCUCUUCG- -5' |
|||||||
31863 | 5' | -52.2 | NC_006938.1 | + | 45684 | 0.7 | 0.578582 |
Target: 5'- gGAGcGGAcu-GAGCCAGGAGcAGCa -3' miRNA: 3'- -CUC-CCUccuCUCGGUCCUCuUCG- -5' |
|||||||
31863 | 5' | -52.2 | NC_006938.1 | + | 55675 | 0.71 | 0.555906 |
Target: 5'- -uGGGAGGAGGGCCcaAGcAGAcGCa -3' miRNA: 3'- cuCCCUCCUCUCGG--UCcUCUuCG- -5' |
|||||||
31863 | 5' | -52.2 | NC_006938.1 | + | 35653 | 0.71 | 0.555906 |
Target: 5'- cGAGGuguggcgcGAGGAGAugcuguccgucGCCAgGGAGGAGCc -3' miRNA: 3'- -CUCC--------CUCCUCU-----------CGGU-CCUCUUCG- -5' |
|||||||
31863 | 5' | -52.2 | NC_006938.1 | + | 37868 | 0.72 | 0.4477 |
Target: 5'- -uGGcuccAGGAGAuCCAGGAGAAGCg -3' miRNA: 3'- cuCCc---UCCUCUcGGUCCUCUUCG- -5' |
|||||||
31863 | 5' | -52.2 | NC_006938.1 | + | 26769 | 0.73 | 0.427452 |
Target: 5'- uGAGGGAGGcAGAGau-GGAGAAGa -3' miRNA: 3'- -CUCCCUCC-UCUCgguCCUCUUCg -5' |
|||||||
31863 | 5' | -52.2 | NC_006938.1 | + | 8785 | 0.75 | 0.343488 |
Target: 5'- gGAGaGGGGGAGAGCUucagagAGGGGAugGGCc -3' miRNA: 3'- -CUC-CCUCCUCUCGG------UCCUCU--UCG- -5' |
|||||||
31863 | 5' | -52.2 | NC_006938.1 | + | 7153 | 0.8 | 0.160756 |
Target: 5'- gGAGGGAGGuGGAGCCGGGGcGAcGCc -3' miRNA: 3'- -CUCCCUCC-UCUCGGUCCU-CUuCG- -5' |
|||||||
31863 | 5' | -52.2 | NC_006938.1 | + | 24668 | 0.7 | 0.612933 |
Target: 5'- cAGGGAGGAGAaGCCGcGAGcgcGCa -3' miRNA: 3'- cUCCCUCCUCU-CGGUcCUCuu-CG- -5' |
|||||||
31863 | 5' | -52.2 | NC_006938.1 | + | 9147 | 0.67 | 0.748818 |
Target: 5'- -uGGGAcGGAGGGU--GGAGAAGUc -3' miRNA: 3'- cuCCCU-CCUCUCGguCCUCUUCG- -5' |
|||||||
31863 | 5' | -52.2 | NC_006938.1 | + | 58420 | 0.66 | 0.830426 |
Target: 5'- aGAGGGAGGAaGAaCUcGGAGAccgcguGGCu -3' miRNA: 3'- -CUCCCUCCU-CUcGGuCCUCU------UCG- -5' |
|||||||
31863 | 5' | -52.2 | NC_006938.1 | + | 30417 | 0.66 | 0.839723 |
Target: 5'- aGAGGGAGGGGAaGaCGGGcuGAcccGGCu -3' miRNA: 3'- -CUCCCUCCUCU-CgGUCCu-CU---UCG- -5' |
|||||||
31863 | 5' | -52.2 | NC_006938.1 | + | 34528 | 0.83 | 0.103821 |
Target: 5'- cGAGGuuGGAGAGCCcaAGGAGggGCg -3' miRNA: 3'- -CUCCcuCCUCUCGG--UCCUCuuCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home