miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31866 5' -62.6 NC_006938.1 + 53150 0.66 0.378965
Target:  5'- -gGACCgGGaCGUCGaaCUGGCAGGc -3'
miRNA:   3'- gaCUGGaCCgGCGGCgaGACCGUCCa -5'
31866 5' -62.6 NC_006938.1 + 57250 0.66 0.369751
Target:  5'- aUGACCUaucgacaGGCCcucgaGCCGCUC-GcGCAGGc -3'
miRNA:   3'- gACUGGA-------CCGG-----CGGCGAGaC-CGUCCa -5'
31866 5' -62.6 NC_006938.1 + 36537 0.66 0.361509
Target:  5'- -cGACCUGGcCCGUCGCgagacgucggcguUCcgcgcGGCAGGc -3'
miRNA:   3'- gaCUGGACC-GGCGGCG-------------AGa----CCGUCCa -5'
31866 5' -62.6 NC_006938.1 + 32114 0.66 0.346204
Target:  5'- -cGACCuUGGCCGgUGaCUCUGGUgccacgAGGa -3'
miRNA:   3'- gaCUGG-ACCGGCgGC-GAGACCG------UCCa -5'
31866 5' -62.6 NC_006938.1 + 25013 0.66 0.346204
Target:  5'- aUGACCUGGCCgaccauguagccaGCCGCgaucacgacaccgaUGGCAGc- -3'
miRNA:   3'- gACUGGACCGG-------------CGGCGag------------ACCGUCca -5'
31866 5' -62.6 NC_006938.1 + 31867 0.68 0.280121
Target:  5'- gUGuCCUGGa-GCCGgUCgUGGCAGGg -3'
miRNA:   3'- gACuGGACCggCGGCgAG-ACCGUCCa -5'
31866 5' -62.6 NC_006938.1 + 37513 0.68 0.26687
Target:  5'- -cGAgCUcgaGGCCGCCGCcgCUGGCAagcuGGa -3'
miRNA:   3'- gaCUgGA---CCGGCGGCGa-GACCGU----CCa -5'
31866 5' -62.6 NC_006938.1 + 17128 0.69 0.241894
Target:  5'- aUGACCUcGGCCGCuCGCUuguaCUGGaucgAGGa -3'
miRNA:   3'- gACUGGA-CCGGCG-GCGA----GACCg---UCCa -5'
31866 5' -62.6 NC_006938.1 + 63441 0.69 0.241894
Target:  5'- -cGACCggcucGCCGCCGCcCUucggaaccuucGGCAGGUg -3'
miRNA:   3'- gaCUGGac---CGGCGGCGaGA-----------CCGUCCA- -5'
31866 5' -62.6 NC_006938.1 + 14701 0.7 0.202895
Target:  5'- -cGACCgucGGCaGCCaGCcaUCUGGCAGGUc -3'
miRNA:   3'- gaCUGGa--CCGgCGG-CG--AGACCGUCCA- -5'
31866 5' -62.6 NC_006938.1 + 22497 0.72 0.144835
Target:  5'- aUGACCagGGCCGUcuCGCUCUGggucGCGGGg -3'
miRNA:   3'- gACUGGa-CCGGCG--GCGAGAC----CGUCCa -5'
31866 5' -62.6 NC_006938.1 + 34123 0.72 0.137377
Target:  5'- -aGGCCUGGaCCcgcugGUCGCUCUGGCucGGUg -3'
miRNA:   3'- gaCUGGACC-GG-----CGGCGAGACCGu-CCA- -5'
31866 5' -62.6 NC_006938.1 + 38636 1.07 0.000277
Target:  5'- aCUGACCUGGCCGCCGCUCUGGCAGGUg -3'
miRNA:   3'- -GACUGGACCGGCGGCGAGACCGUCCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.