miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31869 3' -56.2 NC_006938.1 + 38580 0.66 0.758464
Target:  5'- aCUcCGGCCGUCagGGCgaugcggUCagcgaucgagUCGGugGACa -3'
miRNA:   3'- aGA-GCCGGCAG--CUGa------AG----------AGCCugCUG- -5'
31869 3' -56.2 NC_006938.1 + 7587 0.66 0.717645
Target:  5'- --cUGGCCGagGGCgUCUCGGGcCGAg -3'
miRNA:   3'- agaGCCGGCagCUGaAGAGCCU-GCUg -5'
31869 3' -56.2 NC_006938.1 + 12121 0.66 0.706166
Target:  5'- uUC-CGGCCGgugcucugCGACUUgguggggauguccUUCGGAgCGACg -3'
miRNA:   3'- -AGaGCCGGCa-------GCUGAA-------------GAGCCU-GCUG- -5'
31869 3' -56.2 NC_006938.1 + 26493 0.67 0.696712
Target:  5'- cCUCGaugcGCaCGUgGAUgaUCUCGGGCGGCc -3'
miRNA:   3'- aGAGC----CG-GCAgCUGa-AGAGCCUGCUG- -5'
31869 3' -56.2 NC_006938.1 + 15671 0.67 0.664895
Target:  5'- -gUCGGUCGguacUGGCaggUgUCGGACGACu -3'
miRNA:   3'- agAGCCGGCa---GCUGa--AgAGCCUGCUG- -5'
31869 3' -56.2 NC_006938.1 + 47950 0.68 0.632815
Target:  5'- -gUCGGCCGuggUCGACUgca-GGACGGg -3'
miRNA:   3'- agAGCCGGC---AGCUGAagagCCUGCUg -5'
31869 3' -56.2 NC_006938.1 + 25412 0.68 0.622108
Target:  5'- gCUCGGaCCaGUCGACcgUUCGGGCa-- -3'
miRNA:   3'- aGAGCC-GG-CAGCUGaaGAGCCUGcug -5'
31869 3' -56.2 NC_006938.1 + 6829 0.68 0.622108
Target:  5'- ---aGGCCGagGGCUcUUCGGAgGACg -3'
miRNA:   3'- agagCCGGCagCUGAaGAGCCUgCUG- -5'
31869 3' -56.2 NC_006938.1 + 42159 0.69 0.57945
Target:  5'- aCUCGGCCGUUGACcggUCcUGGAagggucCGAUc -3'
miRNA:   3'- aGAGCCGGCAGCUGa--AGaGCCU------GCUG- -5'
31869 3' -56.2 NC_006938.1 + 42402 0.69 0.57839
Target:  5'- cCUCGG-CGUCGAgUUCUucgccgacgcggcCGGAgCGACg -3'
miRNA:   3'- aGAGCCgGCAGCUgAAGA-------------GCCU-GCUG- -5'
31869 3' -56.2 NC_006938.1 + 32387 0.69 0.568869
Target:  5'- gCUCGGCCaacaaguggGugUUCcCGGACGGCg -3'
miRNA:   3'- aGAGCCGGcag------CugAAGaGCCUGCUG- -5'
31869 3' -56.2 NC_006938.1 + 53347 0.69 0.533299
Target:  5'- gCUCGGCCGUCGACagcaagaccggccUCUCcGuuGACa -3'
miRNA:   3'- aGAGCCGGCAGCUGa------------AGAGcCugCUG- -5'
31869 3' -56.2 NC_006938.1 + 46424 0.7 0.496542
Target:  5'- -aUCGGCC--CGAgCUUCUCGGACGu- -3'
miRNA:   3'- agAGCCGGcaGCU-GAAGAGCCUGCug -5'
31869 3' -56.2 NC_006938.1 + 11553 0.71 0.438018
Target:  5'- -gUgGGCgucgCGUCGugUUCgUCGGGCGGCa -3'
miRNA:   3'- agAgCCG----GCAGCugAAG-AGCCUGCUG- -5'
31869 3' -56.2 NC_006938.1 + 5648 0.71 0.419401
Target:  5'- uUCUCGGCCucccacaucucGUUGACcugugUCUCgaGGACGGCc -3'
miRNA:   3'- -AGAGCCGG-----------CAGCUGa----AGAG--CCUGCUG- -5'
31869 3' -56.2 NC_006938.1 + 18941 0.72 0.375033
Target:  5'- gCUCGGCCGUCGcugccGCUUCagaUGGgagACGACg -3'
miRNA:   3'- aGAGCCGGCAGC-----UGAAGa--GCC---UGCUG- -5'
31869 3' -56.2 NC_006938.1 + 39568 1.11 0.0009
Target:  5'- gUCUCGGCCGUCGACUUCUCGGACGACg -3'
miRNA:   3'- -AGAGCCGGCAGCUGAAGAGCCUGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.