miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31869 5' -56.8 NC_006938.1 + 44211 0.66 0.681085
Target:  5'- cCUGGCcauugAUGCUGuCCGUCACccugauGCCGu- -3'
miRNA:   3'- -GACCG-----UGCGACuGGUAGUGu-----CGGCuc -5'
31869 5' -56.8 NC_006938.1 + 9082 0.66 0.681085
Target:  5'- uUGGCGCGCU--CCAUgAUggAGCCGuGg -3'
miRNA:   3'- gACCGUGCGAcuGGUAgUG--UCGGCuC- -5'
31869 5' -56.8 NC_006938.1 + 51176 0.66 0.681085
Target:  5'- --cGCGCGCUGacggcuGCCAUCGCcGCCa-- -3'
miRNA:   3'- gacCGUGCGAC------UGGUAGUGuCGGcuc -5'
31869 5' -56.8 NC_006938.1 + 59369 0.66 0.681085
Target:  5'- uCUGGCAC---GACCAUCGuCGGuCCGAc -3'
miRNA:   3'- -GACCGUGcgaCUGGUAGU-GUC-GGCUc -5'
31869 5' -56.8 NC_006938.1 + 40167 0.66 0.681085
Target:  5'- gCUGGCu--CUGGCacaAUCACAGUCGGu -3'
miRNA:   3'- -GACCGugcGACUGg--UAGUGUCGGCUc -5'
31869 5' -56.8 NC_006938.1 + 32835 0.66 0.670305
Target:  5'- gCUGGC-CGCgUGGCUcgAggGCAGCUGGGa -3'
miRNA:   3'- -GACCGuGCG-ACUGG--UagUGUCGGCUC- -5'
31869 5' -56.8 NC_006938.1 + 27246 0.66 0.669225
Target:  5'- gUGGCGCGCcaucgucUGAUgGaCGCAGuuGGGg -3'
miRNA:   3'- gACCGUGCG-------ACUGgUaGUGUCggCUC- -5'
31869 5' -56.8 NC_006938.1 + 63084 0.66 0.65949
Target:  5'- gCUGGCaACGUgGGCUGUCGCcGCUGGa -3'
miRNA:   3'- -GACCG-UGCGaCUGGUAGUGuCGGCUc -5'
31869 5' -56.8 NC_006938.1 + 8968 0.66 0.65949
Target:  5'- -cGGCcCGCUGGCaugaagCGCAuGUCGAGg -3'
miRNA:   3'- gaCCGuGCGACUGgua---GUGU-CGGCUC- -5'
31869 5' -56.8 NC_006938.1 + 58150 0.66 0.658406
Target:  5'- gUGGCagggaggGCGUUGAUCGUCACGccccagucuguGCCGGc -3'
miRNA:   3'- gACCG-------UGCGACUGGUAGUGU-----------CGGCUc -5'
31869 5' -56.8 NC_006938.1 + 55406 0.66 0.64865
Target:  5'- -cGGCGCGCUcGCCGcagGCGGCCuGGGc -3'
miRNA:   3'- gaCCGUGCGAcUGGUag-UGUCGG-CUC- -5'
31869 5' -56.8 NC_006938.1 + 50870 0.66 0.64865
Target:  5'- -cGGCAC-C-GACgGagagaUCACGGCCGAGg -3'
miRNA:   3'- gaCCGUGcGaCUGgU-----AGUGUCGGCUC- -5'
31869 5' -56.8 NC_006938.1 + 1998 0.66 0.64865
Target:  5'- aUGGCGCGCUGAUCGUgGaGGUCc-- -3'
miRNA:   3'- gACCGUGCGACUGGUAgUgUCGGcuc -5'
31869 5' -56.8 NC_006938.1 + 10783 0.66 0.637795
Target:  5'- -cGGCGCGCuugcUGACCAggcCACGGaccacuUCGAGa -3'
miRNA:   3'- gaCCGUGCG----ACUGGUa--GUGUC------GGCUC- -5'
31869 5' -56.8 NC_006938.1 + 54192 0.66 0.637795
Target:  5'- uUGGCAaaGCUG-CCGUCugGGCUGu- -3'
miRNA:   3'- gACCGUg-CGACuGGUAGugUCGGCuc -5'
31869 5' -56.8 NC_006938.1 + 50214 0.66 0.634538
Target:  5'- -aGGCACcgGCUGgcuuugucgacaccGCCAUCcaGGCCGGGg -3'
miRNA:   3'- gaCCGUG--CGAC--------------UGGUAGugUCGGCUC- -5'
31869 5' -56.8 NC_006938.1 + 29865 0.66 0.626936
Target:  5'- aCUGG-ACGC-GGCUGUgAUGGCCGAGc -3'
miRNA:   3'- -GACCgUGCGaCUGGUAgUGUCGGCUC- -5'
31869 5' -56.8 NC_006938.1 + 2860 0.66 0.62585
Target:  5'- aUGGCAgGUcGACCG-CGCAggaucccGCCGAGu -3'
miRNA:   3'- gACCGUgCGaCUGGUaGUGU-------CGGCUC- -5'
31869 5' -56.8 NC_006938.1 + 53135 0.66 0.62585
Target:  5'- aCUGGCAgGCUGccuccaccgugguGCCAgacugCGCGGCgagCGAGc -3'
miRNA:   3'- -GACCGUgCGAC-------------UGGUa----GUGUCG---GCUC- -5'
31869 5' -56.8 NC_006938.1 + 47012 0.67 0.616081
Target:  5'- gUGGCaacgACGCUGcCCuggGCGGCCGAa -3'
miRNA:   3'- gACCG----UGCGACuGGuagUGUCGGCUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.