Results 21 - 40 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31870 | 3' | -52 | NC_006938.1 | + | 40956 | 0.67 | 0.862586 |
Target: 5'- -cCCGcgaugggaauGCCAGUCAGGAAGUaaCACAuggGCa -3' miRNA: 3'- gaGGC----------UGGUUAGUCCUUCA--GUGU---CGg -5' |
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31870 | 3' | -52 | NC_006938.1 | + | 39400 | 0.67 | 0.857595 |
Target: 5'- gCUCCGGguagacCCGGUucCAGGAAGUCGCgauguugagguuguuGGUCg -3' miRNA: 3'- -GAGGCU------GGUUA--GUCCUUCAGUG---------------UCGG- -5' |
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31870 | 3' | -52 | NC_006938.1 | + | 29599 | 0.67 | 0.85422 |
Target: 5'- gCUCCGACCu----GGAcuGUC-CGGCCu -3' miRNA: 3'- -GAGGCUGGuuaguCCUu-CAGuGUCGG- -5' |
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31870 | 3' | -52 | NC_006938.1 | + | 50858 | 0.67 | 0.85337 |
Target: 5'- gCUCCG-CCAGcUCGGcaccgacGGAGagaUCACGGCCg -3' miRNA: 3'- -GAGGCuGGUU-AGUC-------CUUC---AGUGUCGG- -5' |
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31870 | 3' | -52 | NC_006938.1 | + | 52867 | 0.67 | 0.845617 |
Target: 5'- gUCCGuCCAGUCcuugaaccGGAAGcCACGcGCCc -3' miRNA: 3'- gAGGCuGGUUAGu-------CCUUCaGUGU-CGG- -5' |
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31870 | 3' | -52 | NC_006938.1 | + | 21145 | 0.67 | 0.845617 |
Target: 5'- aUCCGGCCGuUCGGGAcgauugacaugAG-CACccacgGGCCg -3' miRNA: 3'- gAGGCUGGUuAGUCCU-----------UCaGUG-----UCGG- -5' |
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31870 | 3' | -52 | NC_006938.1 | + | 40171 | 0.67 | 0.845617 |
Target: 5'- gCUCUGGCaCAAUCAcagucGGugcacAGGUCACGGaCCa -3' miRNA: 3'- -GAGGCUG-GUUAGU-----CC-----UUCAGUGUC-GG- -5' |
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31870 | 3' | -52 | NC_006938.1 | + | 25650 | 0.67 | 0.845617 |
Target: 5'- -cCCGACCcGUucCAGGcguGGGUCAC-GCCg -3' miRNA: 3'- gaGGCUGGuUA--GUCC---UUCAGUGuCGG- -5' |
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31870 | 3' | -52 | NC_006938.1 | + | 25462 | 0.68 | 0.827734 |
Target: 5'- gUUCGACCAGcUGGcGAAG-CACAGCUu -3' miRNA: 3'- gAGGCUGGUUaGUC-CUUCaGUGUCGG- -5' |
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31870 | 3' | -52 | NC_006938.1 | + | 51552 | 0.68 | 0.827734 |
Target: 5'- gCUCCGGCCGcgacgAGGAuGUCGaAGCCc -3' miRNA: 3'- -GAGGCUGGUuag--UCCUuCAGUgUCGG- -5' |
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31870 | 3' | -52 | NC_006938.1 | + | 56441 | 0.68 | 0.809012 |
Target: 5'- uUCCcuCCAG-CAGGAgGGUCGgAGCCg -3' miRNA: 3'- gAGGcuGGUUaGUCCU-UCAGUgUCGG- -5' |
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31870 | 3' | -52 | NC_006938.1 | + | 10981 | 0.68 | 0.809012 |
Target: 5'- -aUCGGCCgGGUCuGGGGAGcCAUGGCCu -3' miRNA: 3'- gaGGCUGG-UUAG-UCCUUCaGUGUCGG- -5' |
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31870 | 3' | -52 | NC_006938.1 | + | 33113 | 0.68 | 0.809012 |
Target: 5'- cCUCC-ACCugcccucgcuGUCcuGGAAGUCAgAGCCg -3' miRNA: 3'- -GAGGcUGGu---------UAGu-CCUUCAGUgUCGG- -5' |
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31870 | 3' | -52 | NC_006938.1 | + | 17309 | 0.68 | 0.808055 |
Target: 5'- uCUCCG-CCAGguugcccUCGcGGAGGUgGCAGaCCa -3' miRNA: 3'- -GAGGCuGGUU-------AGU-CCUUCAgUGUC-GG- -5' |
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31870 | 3' | -52 | NC_006938.1 | + | 45724 | 0.68 | 0.799361 |
Target: 5'- -cUCGAUCGGUCAGGuAGGUCgugacaaaggcgGCGGUCa -3' miRNA: 3'- gaGGCUGGUUAGUCC-UUCAG------------UGUCGG- -5' |
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31870 | 3' | -52 | NC_006938.1 | + | 40125 | 0.69 | 0.748657 |
Target: 5'- -gCCGGUCAGcCGGGu-GUCGCGGCCg -3' miRNA: 3'- gaGGCUGGUUaGUCCuuCAGUGUCGG- -5' |
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31870 | 3' | -52 | NC_006938.1 | + | 8368 | 0.7 | 0.716692 |
Target: 5'- -gCCGACCAc-CGGGAGGUCucccucgaAGCCc -3' miRNA: 3'- gaGGCUGGUuaGUCCUUCAGug------UCGG- -5' |
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31870 | 3' | -52 | NC_006938.1 | + | 42255 | 0.7 | 0.694936 |
Target: 5'- aUCgGACCcuucCAGGAccGGUCaACGGCCg -3' miRNA: 3'- gAGgCUGGuua-GUCCU--UCAG-UGUCGG- -5' |
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31870 | 3' | -52 | NC_006938.1 | + | 13290 | 0.71 | 0.639656 |
Target: 5'- -aCCGggucauACCGGUCAGGA--UCAUGGCCa -3' miRNA: 3'- gaGGC------UGGUUAGUCCUucAGUGUCGG- -5' |
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31870 | 3' | -52 | NC_006938.1 | + | 15006 | 0.71 | 0.632985 |
Target: 5'- cCUCCGGCCAcuucgaaacgagggaGUuuguggucgugCAGGAguAGaUCACAGCCu -3' miRNA: 3'- -GAGGCUGGU---------------UA-----------GUCCU--UC-AGUGUCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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