miRNA display CGI


Results 21 - 40 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31870 5' -54.7 NC_006938.1 + 55506 0.67 0.725166
Target:  5'- -gGGGCGagaAGCCCaGGCCGcCuGCGGCg -3'
miRNA:   3'- ugCCUGUg--UUGGGaCUGGCaG-UGUCG- -5'
31870 5' -54.7 NC_006938.1 + 28992 0.67 0.725166
Target:  5'- gAUGGACACGGCCC-GACaGaUACAGg -3'
miRNA:   3'- -UGCCUGUGUUGGGaCUGgCaGUGUCg -5'
31870 5' -54.7 NC_006938.1 + 5507 0.67 0.714606
Target:  5'- -aGGACGCGccACCC--GCCGcUgGCAGCa -3'
miRNA:   3'- ugCCUGUGU--UGGGacUGGC-AgUGUCG- -5'
31870 5' -54.7 NC_006938.1 + 6882 0.67 0.714606
Target:  5'- gUGGACAgguCGGCCUUGGCC-UCGCcGCc -3'
miRNA:   3'- uGCCUGU---GUUGGGACUGGcAGUGuCG- -5'
31870 5' -54.7 NC_006938.1 + 34653 0.67 0.713546
Target:  5'- cCGGGCAuucgcucCGACCCUGGCCugcucGUCcuGCAGg -3'
miRNA:   3'- uGCCUGU-------GUUGGGACUGG-----CAG--UGUCg -5'
31870 5' -54.7 NC_006938.1 + 14718 0.68 0.703967
Target:  5'- cCGGACcuCGAgguuCCC-GACCGUCgGCAGCc -3'
miRNA:   3'- uGCCUGu-GUU----GGGaCUGGCAG-UGUCG- -5'
31870 5' -54.7 NC_006938.1 + 37041 0.68 0.703967
Target:  5'- -gGGACAUGACCC-GGCCccuGUCACcGUg -3'
miRNA:   3'- ugCCUGUGUUGGGaCUGG---CAGUGuCG- -5'
31870 5' -54.7 NC_006938.1 + 54099 0.68 0.693259
Target:  5'- uCGGAUACAGCCCaGACg---GCAGCu -3'
miRNA:   3'- uGCCUGUGUUGGGaCUGgcagUGUCG- -5'
31870 5' -54.7 NC_006938.1 + 26854 0.68 0.693259
Target:  5'- gACaGACGacgaGAUCCUGGCCGcguuUCGCGGUc -3'
miRNA:   3'- -UGcCUGUg---UUGGGACUGGC----AGUGUCG- -5'
31870 5' -54.7 NC_006938.1 + 51210 0.68 0.693259
Target:  5'- uUGGGCu--ACuCCUGACUGUCAUuGCg -3'
miRNA:   3'- uGCCUGuguUG-GGACUGGCAGUGuCG- -5'
31870 5' -54.7 NC_006938.1 + 62786 0.68 0.693259
Target:  5'- uGCGccaGACGCcGCCCUG-CCGagUgGCAGCg -3'
miRNA:   3'- -UGC---CUGUGuUGGGACuGGC--AgUGUCG- -5'
31870 5' -54.7 NC_006938.1 + 39586 0.68 0.690034
Target:  5'- uCGGACgACGucgccgccacuggcACgCUGACCaUCACAGCc -3'
miRNA:   3'- uGCCUG-UGU--------------UGgGACUGGcAGUGUCG- -5'
31870 5' -54.7 NC_006938.1 + 54613 0.68 0.67168
Target:  5'- gACGGACAa---CCgGACCuUCACAGUc -3'
miRNA:   3'- -UGCCUGUguugGGaCUGGcAGUGUCG- -5'
31870 5' -54.7 NC_006938.1 + 3378 0.68 0.67168
Target:  5'- gGCGGGCAuCAuugacACUCUGAUCGUCcucgcgcccaACGGUg -3'
miRNA:   3'- -UGCCUGU-GU-----UGGGACUGGCAG----------UGUCG- -5'
31870 5' -54.7 NC_006938.1 + 44589 0.68 0.66083
Target:  5'- aAauGAUGCGACCCUGAUUGUCuauGCg -3'
miRNA:   3'- -UgcCUGUGUUGGGACUGGCAGuguCG- -5'
31870 5' -54.7 NC_006938.1 + 27109 0.68 0.66083
Target:  5'- cGCGGACGCGGCgcucccacuCCUcGCCGUgC-CAGCu -3'
miRNA:   3'- -UGCCUGUGUUG---------GGAcUGGCA-GuGUCG- -5'
31870 5' -54.7 NC_006938.1 + 26217 0.68 0.66083
Target:  5'- cCGG-CGCGGCCCgUGGCCuGcCACAuGCa -3'
miRNA:   3'- uGCCuGUGUUGGG-ACUGG-CaGUGU-CG- -5'
31870 5' -54.7 NC_006938.1 + 41360 0.68 0.66083
Target:  5'- -gGGACugGA-CCUGACUGUgAuCGGCa -3'
miRNA:   3'- ugCCUGugUUgGGACUGGCAgU-GUCG- -5'
31870 5' -54.7 NC_006938.1 + 38524 0.68 0.66083
Target:  5'- cGCGGACAUcgccGCCCUGaacGCCGcgauCGGCa -3'
miRNA:   3'- -UGCCUGUGu---UGGGAC---UGGCagu-GUCG- -5'
31870 5' -54.7 NC_006938.1 + 32500 0.68 0.649954
Target:  5'- gGCGGAagaGCAGCuCCUcGCCGUC-CGGg -3'
miRNA:   3'- -UGCCUg--UGUUG-GGAcUGGCAGuGUCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.