miRNA display CGI


Results 21 - 40 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31871 3' -55.6 NC_006938.1 + 1700 0.68 0.640106
Target:  5'- -gGAGCUCgacCCguacaucugcgaCGACGCcauGGACAGCu -3'
miRNA:   3'- agCUCGAGaa-GGa-----------GCUGCG---CCUGUCG- -5'
31871 3' -55.6 NC_006938.1 + 45910 0.68 0.631467
Target:  5'- uUCGAGgUCcugaucggagCCUCGGCGgCGGAgaCGGCc -3'
miRNA:   3'- -AGCUCgAGaa--------GGAGCUGC-GCCU--GUCG- -5'
31871 3' -55.6 NC_006938.1 + 36970 0.68 0.620671
Target:  5'- -aGGGCUgUUCgga-GCGCGGACGGCu -3'
miRNA:   3'- agCUCGAgAAGgagcUGCGCCUGUCG- -5'
31871 3' -55.6 NC_006938.1 + 8865 0.68 0.614197
Target:  5'- gCGAGagaUCcUCCUCGACaugcgcuucaugccaGCGGGCcGCg -3'
miRNA:   3'- aGCUCg--AGaAGGAGCUG---------------CGCCUGuCG- -5'
31871 3' -55.6 NC_006938.1 + 46351 0.68 0.609883
Target:  5'- cUCGGGCcgaUCCagaCGgacuACGCGGACGGCg -3'
miRNA:   3'- -AGCUCGagaAGGa--GC----UGCGCCUGUCG- -5'
31871 3' -55.6 NC_006938.1 + 4395 0.68 0.609883
Target:  5'- gCGGGUUC-UCCUUGAaggUGUGGACGcGCu -3'
miRNA:   3'- aGCUCGAGaAGGAGCU---GCGCCUGU-CG- -5'
31871 3' -55.6 NC_006938.1 + 34244 0.69 0.599115
Target:  5'- gCGuGCUCaUCCUCGGCGa-GGCGGa -3'
miRNA:   3'- aGCuCGAGaAGGAGCUGCgcCUGUCg -5'
31871 3' -55.6 NC_006938.1 + 10250 0.69 0.588373
Target:  5'- cCGAGgUCUUucCCUCGAcgccgaacaCGCGGACAc- -3'
miRNA:   3'- aGCUCgAGAA--GGAGCU---------GCGCCUGUcg -5'
31871 3' -55.6 NC_006938.1 + 34052 0.69 0.567005
Target:  5'- aUGAGCUgcUCCUCGuugauccgGCGGAgCAGCa -3'
miRNA:   3'- aGCUCGAgaAGGAGCug------CGCCU-GUCG- -5'
31871 3' -55.6 NC_006938.1 + 54767 0.69 0.550053
Target:  5'- gUCGAGCUCUUCCUCcccAUGagcuuuacuguccaGGuCGGCg -3'
miRNA:   3'- -AGCUCGAGAAGGAGc--UGCg-------------CCuGUCG- -5'
31871 3' -55.6 NC_006938.1 + 53764 0.69 0.545839
Target:  5'- aCGcgcuGCUCUUgaaCUUCGACGCGGAU-GCc -3'
miRNA:   3'- aGCu---CGAGAA---GGAGCUGCGCCUGuCG- -5'
31871 3' -55.6 NC_006938.1 + 28038 0.69 0.545839
Target:  5'- -gGAGCUCUggUUCGAUGCcaagggcGACAGCa -3'
miRNA:   3'- agCUCGAGAagGAGCUGCGc------CUGUCG- -5'
31871 3' -55.6 NC_006938.1 + 12553 0.69 0.545839
Target:  5'- cUGAacaacCUCUUCCUCGA-GUGGaACAGCg -3'
miRNA:   3'- aGCUc----GAGAAGGAGCUgCGCC-UGUCG- -5'
31871 3' -55.6 NC_006938.1 + 60893 0.7 0.524933
Target:  5'- gCGAGgUCguguUCCUCuccaacuucgagGACGCGGACcucAGCa -3'
miRNA:   3'- aGCUCgAGa---AGGAG------------CUGCGCCUG---UCG- -5'
31871 3' -55.6 NC_006938.1 + 23597 0.7 0.499243
Target:  5'- uUCGAGCUCggcgacgacaagcagUacucCCUCGAcuucacguaugaagaCGCGGACGGUg -3'
miRNA:   3'- -AGCUCGAGa--------------A----GGAGCU---------------GCGCCUGUCG- -5'
31871 3' -55.6 NC_006938.1 + 46292 0.7 0.49316
Target:  5'- aCGAGCUCUUCCaggaccccacgaUCGAUccaagugGCaGGGCGGUc -3'
miRNA:   3'- aGCUCGAGAAGG------------AGCUG-------CG-CCUGUCG- -5'
31871 3' -55.6 NC_006938.1 + 23 0.71 0.4841
Target:  5'- gCGguGGCUCgaccaCCgUCGACGCGGAgAGUg -3'
miRNA:   3'- aGC--UCGAGaa---GG-AGCUGCGCCUgUCG- -5'
31871 3' -55.6 NC_006938.1 + 30117 0.71 0.4841
Target:  5'- -gGAGUUCUgCCUgGgcguucGCGCGGGCAGUu -3'
miRNA:   3'- agCUCGAGAaGGAgC------UGCGCCUGUCG- -5'
31871 3' -55.6 NC_006938.1 + 3348 0.71 0.435321
Target:  5'- gUCGAGCUCcUCCUCcugguGAUugaaGGGCGGCa -3'
miRNA:   3'- -AGCUCGAGaAGGAG-----CUGcg--CCUGUCG- -5'
31871 3' -55.6 NC_006938.1 + 56283 0.72 0.415695
Target:  5'- -aGAGCUUcgugcggacggcgUUCUUCGGCaCGGGCGGCu -3'
miRNA:   3'- agCUCGAG-------------AAGGAGCUGcGCCUGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.