miRNA display CGI


Results 1 - 20 of 54 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31871 3' -55.6 NC_006938.1 + 46351 0.68 0.609883
Target:  5'- cUCGGGCcgaUCCagaCGgacuACGCGGACGGCg -3'
miRNA:   3'- -AGCUCGagaAGGa--GC----UGCGCCUGUCG- -5'
31871 3' -55.6 NC_006938.1 + 46292 0.7 0.49316
Target:  5'- aCGAGCUCUUCCaggaccccacgaUCGAUccaagugGCaGGGCGGUc -3'
miRNA:   3'- aGCUCGAGAAGG------------AGCUG-------CG-CCUGUCG- -5'
31871 3' -55.6 NC_006938.1 + 23597 0.7 0.499243
Target:  5'- uUCGAGCUCggcgacgacaagcagUacucCCUCGAcuucacguaugaagaCGCGGACGGUg -3'
miRNA:   3'- -AGCUCGAGa--------------A----GGAGCU---------------GCGCCUGUCG- -5'
31871 3' -55.6 NC_006938.1 + 60893 0.7 0.524933
Target:  5'- gCGAGgUCguguUCCUCuccaacuucgagGACGCGGACcucAGCa -3'
miRNA:   3'- aGCUCgAGa---AGGAG------------CUGCGCCUG---UCG- -5'
31871 3' -55.6 NC_006938.1 + 12553 0.69 0.545839
Target:  5'- cUGAacaacCUCUUCCUCGA-GUGGaACAGCg -3'
miRNA:   3'- aGCUc----GAGAAGGAGCUgCGCC-UGUCG- -5'
31871 3' -55.6 NC_006938.1 + 28038 0.69 0.545839
Target:  5'- -gGAGCUCUggUUCGAUGCcaagggcGACAGCa -3'
miRNA:   3'- agCUCGAGAagGAGCUGCGc------CUGUCG- -5'
31871 3' -55.6 NC_006938.1 + 53764 0.69 0.545839
Target:  5'- aCGcgcuGCUCUUgaaCUUCGACGCGGAU-GCc -3'
miRNA:   3'- aGCu---CGAGAA---GGAGCUGCGCCUGuCG- -5'
31871 3' -55.6 NC_006938.1 + 54767 0.69 0.550053
Target:  5'- gUCGAGCUCUUCCUCcccAUGagcuuuacuguccaGGuCGGCg -3'
miRNA:   3'- -AGCUCGAGAAGGAGc--UGCg-------------CCuGUCG- -5'
31871 3' -55.6 NC_006938.1 + 34244 0.69 0.599115
Target:  5'- gCGuGCUCaUCCUCGGCGa-GGCGGa -3'
miRNA:   3'- aGCuCGAGaAGGAGCUGCgcCUGUCg -5'
31871 3' -55.6 NC_006938.1 + 30117 0.71 0.4841
Target:  5'- -gGAGUUCUgCCUgGgcguucGCGCGGGCAGUu -3'
miRNA:   3'- agCUCGAGAaGGAgC------UGCGCCUGUCG- -5'
31871 3' -55.6 NC_006938.1 + 23 0.71 0.4841
Target:  5'- gCGguGGCUCgaccaCCgUCGACGCGGAgAGUg -3'
miRNA:   3'- aGC--UCGAGaa---GG-AGCUGCGCCUgUCG- -5'
31871 3' -55.6 NC_006938.1 + 56283 0.72 0.415695
Target:  5'- -aGAGCUUcgugcggacggcgUUCUUCGGCaCGGGCGGCu -3'
miRNA:   3'- agCUCGAG-------------AAGGAGCUGcGCCUGUCG- -5'
31871 3' -55.6 NC_006938.1 + 56441 0.88 0.03766
Target:  5'- cUUGGGC---UCCUCGACGCGGACAGCa -3'
miRNA:   3'- -AGCUCGagaAGGAGCUGCGCCUGUCG- -5'
31871 3' -55.6 NC_006938.1 + 61377 0.83 0.086001
Target:  5'- -gGAGgUCUUCCUCGACGgGGuCAGCc -3'
miRNA:   3'- agCUCgAGAAGGAGCUGCgCCuGUCG- -5'
31871 3' -55.6 NC_006938.1 + 42409 0.76 0.227954
Target:  5'- gUCGAGUUCUUCgC-CGACGCGGcCGGa -3'
miRNA:   3'- -AGCUCGAGAAG-GaGCUGCGCCuGUCg -5'
31871 3' -55.6 NC_006938.1 + 53268 0.76 0.252441
Target:  5'- gUCGAGUUCUUCUUcacggaccaCGACGUGGACAu- -3'
miRNA:   3'- -AGCUCGAGAAGGA---------GCUGCGCCUGUcg -5'
31871 3' -55.6 NC_006938.1 + 52880 0.75 0.279053
Target:  5'- cUCGGGCUCgaccUCUUCGAC-CGGAuccuCAGCa -3'
miRNA:   3'- -AGCUCGAGa---AGGAGCUGcGCCU----GUCG- -5'
31871 3' -55.6 NC_006938.1 + 61721 0.75 0.293176
Target:  5'- cCG-GCUCccuccUCCUgGACGgGGACGGCg -3'
miRNA:   3'- aGCuCGAGa----AGGAgCUGCgCCUGUCG- -5'
31871 3' -55.6 NC_006938.1 + 15460 0.73 0.342086
Target:  5'- gUGGGCcgCUggCCUCGAccaggagcgggcugaCGCGGGCGGCa -3'
miRNA:   3'- aGCUCGa-GAa-GGAGCU---------------GCGCCUGUCG- -5'
31871 3' -55.6 NC_006938.1 + 48024 0.72 0.398413
Target:  5'- ---cGCUCgacaagaCCUCGggcgGCGCGGACGGCa -3'
miRNA:   3'- agcuCGAGaa-----GGAGC----UGCGCCUGUCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.