Results 1 - 17 of 17 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31873 | 3' | -57.6 | NC_006938.1 | + | 40432 | 1.09 | 0.000771 |
Target: 5'- aUCACCGACGCCGCGCCGGACUUUGUCc -3' miRNA: 3'- -AGUGGCUGCGGCGCGGCCUGAAACAG- -5' |
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31873 | 3' | -57.6 | NC_006938.1 | + | 20823 | 0.66 | 0.636602 |
Target: 5'- cUACCGcCGCCGCG-CGGGCa----- -3' miRNA: 3'- aGUGGCuGCGGCGCgGCCUGaaacag -5' |
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31873 | 3' | -57.6 | NC_006938.1 | + | 8033 | 0.66 | 0.636602 |
Target: 5'- uUCACgGAgGCCaaGCCGGACa----- -3' miRNA: 3'- -AGUGgCUgCGGcgCGGCCUGaaacag -5' |
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31873 | 3' | -57.6 | NC_006938.1 | + | 40705 | 0.66 | 0.625909 |
Target: 5'- aCGCUGGCccGCCGCGC-GGACUUc--- -3' miRNA: 3'- aGUGGCUG--CGGCGCGgCCUGAAacag -5' |
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31873 | 3' | -57.6 | NC_006938.1 | + | 1795 | 0.67 | 0.583277 |
Target: 5'- -uGCCGAcCGCCGCGCgaccccugucCGGGCUUc--- -3' miRNA: 3'- agUGGCU-GCGGCGCG----------GCCUGAAacag -5' |
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31873 | 3' | -57.6 | NC_006938.1 | + | 47601 | 0.67 | 0.551675 |
Target: 5'- aUCACCGGCGUCacgGCGaCCGGAUa----- -3' miRNA: 3'- -AGUGGCUGCGG---CGC-GGCCUGaaacag -5' |
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31873 | 3' | -57.6 | NC_006938.1 | + | 50196 | 0.68 | 0.541252 |
Target: 5'- aCACCGGCuacuCCGCccaggcaccgGCUGG-CUUUGUCg -3' miRNA: 3'- aGUGGCUGc---GGCG----------CGGCCuGAAACAG- -5' |
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31873 | 3' | -57.6 | NC_006938.1 | + | 41845 | 0.68 | 0.541252 |
Target: 5'- aCACCGGCucuGUCGgGCUGGAgUUgccGUCg -3' miRNA: 3'- aGUGGCUG---CGGCgCGGCCUgAAa--CAG- -5' |
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31873 | 3' | -57.6 | NC_006938.1 | + | 26929 | 0.68 | 0.530896 |
Target: 5'- -gACCGGCGCgGC-CCGuGACUgggccUGUCc -3' miRNA: 3'- agUGGCUGCGgCGcGGC-CUGAa----ACAG- -5' |
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31873 | 3' | -57.6 | NC_006938.1 | + | 5916 | 0.68 | 0.500287 |
Target: 5'- gUCAgCGACGCUGCGCUc--CUUUGUg -3' miRNA: 3'- -AGUgGCUGCGGCGCGGccuGAAACAg -5' |
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31873 | 3' | -57.6 | NC_006938.1 | + | 9661 | 0.69 | 0.480321 |
Target: 5'- aCGCgGuCGuCCGCGCCauGGACaacgUUGUCg -3' miRNA: 3'- aGUGgCuGC-GGCGCGG--CCUGa---AACAG- -5' |
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31873 | 3' | -57.6 | NC_006938.1 | + | 22750 | 0.69 | 0.441611 |
Target: 5'- cUC-CCGGCGCUucaugGUGCUGGACg-UGUCg -3' miRNA: 3'- -AGuGGCUGCGG-----CGCGGCCUGaaACAG- -5' |
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31873 | 3' | -57.6 | NC_006938.1 | + | 41146 | 0.7 | 0.40473 |
Target: 5'- cCGCUGGCuccuucGCCGCGCgGGACcgaGUCa -3' miRNA: 3'- aGUGGCUG------CGGCGCGgCCUGaaaCAG- -5' |
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31873 | 3' | -57.6 | NC_006938.1 | + | 10704 | 0.71 | 0.337089 |
Target: 5'- cCACCGAgCGCCugacgGUGUCGGGCgugGUCa -3' miRNA: 3'- aGUGGCU-GCGG-----CGCGGCCUGaaaCAG- -5' |
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31873 | 3' | -57.6 | NC_006938.1 | + | 47686 | 0.67 | 0.604548 |
Target: 5'- --uCCGGCGCCGUgacGCCGGuga-UGUCc -3' miRNA: 3'- aguGGCUGCGGCG---CGGCCugaaACAG- -5' |
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31873 | 3' | -57.6 | NC_006938.1 | + | 27009 | 0.67 | 0.583277 |
Target: 5'- gUCACgG--GCCGCGCCGGuccACUUggaguggGUCa -3' miRNA: 3'- -AGUGgCugCGGCGCGGCC---UGAAa------CAG- -5' |
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31873 | 3' | -57.6 | NC_006938.1 | + | 36628 | 0.71 | 0.345078 |
Target: 5'- aCGCCGACGUcuCGCGaCGGGCcagGUCg -3' miRNA: 3'- aGUGGCUGCG--GCGCgGCCUGaaaCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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