Results 21 - 30 of 30 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 31873 | 5' | -57.2 | NC_006938.1 | + | 58088 | 0.69 | 0.515285 |
|
Target: 5'- gACGACGCcCUUCCaaACGGACGAgaccaCCAGc -3' miRNA: 3'- -UGCUGUGaGGAGGc-UGCCUGCU-----GGUC- -5' |
|||||||
| 31873 | 5' | -57.2 | NC_006938.1 | + | 18499 | 0.69 | 0.495161 |
|
Target: 5'- gGCGGCGCaUCUaCCGGcCGGACGACg-- -3' miRNA: 3'- -UGCUGUG-AGGaGGCU-GCCUGCUGguc -5' |
|||||||
| 31873 | 5' | -57.2 | NC_006938.1 | + | 17466 | 0.7 | 0.437116 |
|
Target: 5'- -gGACACaggucCCUCCGuGCGGACGGgCGGu -3' miRNA: 3'- ugCUGUGa----GGAGGC-UGCCUGCUgGUC- -5' |
|||||||
| 31873 | 5' | -57.2 | NC_006938.1 | + | 35379 | 0.71 | 0.409596 |
|
Target: 5'- gAUGGgAUUCCacgaugCCGACuGACGACCAGa -3' miRNA: 3'- -UGCUgUGAGGa-----GGCUGcCUGCUGGUC- -5' |
|||||||
| 31873 | 5' | -57.2 | NC_006938.1 | + | 21051 | 0.71 | 0.391859 |
|
Target: 5'- -aGACGCgCCUCCGuuucuGCGaGCGACCAGu -3' miRNA: 3'- ugCUGUGaGGAGGC-----UGCcUGCUGGUC- -5' |
|||||||
| 31873 | 5' | -57.2 | NC_006938.1 | + | 18167 | 0.72 | 0.341742 |
|
Target: 5'- cCGACGCUCCUUCGucgcuCGGAucuCGACCu- -3' miRNA: 3'- uGCUGUGAGGAGGCu----GCCU---GCUGGuc -5' |
|||||||
| 31873 | 5' | -57.2 | NC_006938.1 | + | 40501 | 0.72 | 0.341742 |
|
Target: 5'- cCGAacccCGCuUCCUCCGAucCGGACGACgAGg -3' miRNA: 3'- uGCU----GUG-AGGAGGCU--GCCUGCUGgUC- -5' |
|||||||
| 31873 | 5' | -57.2 | NC_006938.1 | + | 30931 | 0.72 | 0.333853 |
|
Target: 5'- gGCGuACACUCaCUCCGuCuGGCGGCCAa -3' miRNA: 3'- -UGC-UGUGAG-GAGGCuGcCUGCUGGUc -5' |
|||||||
| 31873 | 5' | -57.2 | NC_006938.1 | + | 43040 | 0.74 | 0.243455 |
|
Target: 5'- aACGugGuCUCagucccguuugaCUCCGACGaGACGACCGGg -3' miRNA: 3'- -UGCugU-GAG------------GAGGCUGC-CUGCUGGUC- -5' |
|||||||
| 31873 | 5' | -57.2 | NC_006938.1 | + | 40468 | 1.09 | 0.000938 |
|
Target: 5'- gACGACACUCCUCCGACGGACGACCAGg -3' miRNA: 3'- -UGCUGUGAGGAGGCUGCCUGCUGGUC- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home