miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31874 3' -53.7 NC_006938.1 + 12305 0.66 0.853979
Target:  5'- aGAUCUaucgcaGGCGcucCGAGGGGAUCgaGGg -3'
miRNA:   3'- gCUAGA------CUGCcu-GCUCCUCUAGgaCC- -5'
31874 3' -53.7 NC_006938.1 + 7329 0.66 0.845597
Target:  5'- -uGUCUGGCuucaucccGGACGA-GAGAccgUCCUGGc -3'
miRNA:   3'- gcUAGACUG--------CCUGCUcCUCU---AGGACC- -5'
31874 3' -53.7 NC_006938.1 + 20419 0.67 0.800612
Target:  5'- gGGUUUGGCacaaGAGGAGGUgCCUGGc -3'
miRNA:   3'- gCUAGACUGccugCUCCUCUA-GGACC- -5'
31874 3' -53.7 NC_006938.1 + 57748 0.68 0.785258
Target:  5'- aCGGUCggGGCGGACcugacccuggaggugGAGGGGAUCUc-- -3'
miRNA:   3'- -GCUAGa-CUGCCUG---------------CUCCUCUAGGacc -5'
31874 3' -53.7 NC_006938.1 + 30099 0.68 0.781356
Target:  5'- uCGGUUcGGCGGAgGcuGGGAGuucugCCUGGg -3'
miRNA:   3'- -GCUAGaCUGCCUgC--UCCUCua---GGACC- -5'
31874 3' -53.7 NC_006938.1 + 35652 0.68 0.761501
Target:  5'- cCGAggUGugGcGCGAGGAGAUgCUGu -3'
miRNA:   3'- -GCUagACugCcUGCUCCUCUAgGACc -5'
31874 3' -53.7 NC_006938.1 + 31838 0.68 0.751375
Target:  5'- gCGGgagCUGuuccgucgcGCGGuCGAGGGuGUCCUGGa -3'
miRNA:   3'- -GCUa--GAC---------UGCCuGCUCCUcUAGGACC- -5'
31874 3' -53.7 NC_006938.1 + 26834 0.69 0.709807
Target:  5'- gCGGUCaUGaACGGcacgaagacagACGAcGAGAUCCUGGc -3'
miRNA:   3'- -GCUAG-AC-UGCC-----------UGCUcCUCUAGGACC- -5'
31874 3' -53.7 NC_006938.1 + 19542 0.69 0.706633
Target:  5'- gGAUCgggGacugcgugugccucGCGGACGGGGAGAUggUGGa -3'
miRNA:   3'- gCUAGa--C--------------UGCCUGCUCCUCUAggACC- -5'
31874 3' -53.7 NC_006938.1 + 46602 0.7 0.677817
Target:  5'- ---gCUG-CcGACGAGGAGGUCCUGu -3'
miRNA:   3'- gcuaGACuGcCUGCUCCUCUAGGACc -5'
31874 3' -53.7 NC_006938.1 + 13213 0.7 0.667056
Target:  5'- cCGGUCcgaGACGGGCGGGcuGAcagUCCUGGc -3'
miRNA:   3'- -GCUAGa--CUGCCUGCUCcuCU---AGGACC- -5'
31874 3' -53.7 NC_006938.1 + 31056 0.7 0.634623
Target:  5'- gGA-CUGAUGGACGAGGGcGAaggcggcguccuUCUUGGc -3'
miRNA:   3'- gCUaGACUGCCUGCUCCU-CU------------AGGACC- -5'
31874 3' -53.7 NC_006938.1 + 23525 0.73 0.456872
Target:  5'- gGAUCUGACGGGCcaggucGAGGAGcucUCC-GGa -3'
miRNA:   3'- gCUAGACUGCCUG------CUCCUCu--AGGaCC- -5'
31874 3' -53.7 NC_006938.1 + 40559 1.12 0.001377
Target:  5'- aCGAUCUGACGGACGAGGAGAUCCUGGa -3'
miRNA:   3'- -GCUAGACUGCCUGCUCCUCUAGGACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.