miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31875 3' -57.6 NC_006938.1 + 41391 0.66 0.61141
Target:  5'- cGCCUCGACGGgcucGUCGgccuguGGGUCGUg-- -3'
miRNA:   3'- cUGGAGCUGCCa---CAGU------UCCGGCAgga -5'
31875 3' -57.6 NC_006938.1 + 54838 0.67 0.600729
Target:  5'- aGAgCUCGACuGUGUUGGuGGCCG-CCg -3'
miRNA:   3'- -CUgGAGCUGcCACAGUU-CCGGCaGGa -5'
31875 3' -57.6 NC_006938.1 + 59913 0.67 0.57945
Target:  5'- aGugUg-GAUGGUGUCGuacaccAGGCCGUCUUu -3'
miRNA:   3'- -CugGagCUGCCACAGU------UCCGGCAGGA- -5'
31875 3' -57.6 NC_006938.1 + 39939 0.67 0.57945
Target:  5'- cGGCCUUGGCuGUgacgGUCAGGGuuguguCCGUCCg -3'
miRNA:   3'- -CUGGAGCUGcCA----CAGUUCC------GGCAGGa -5'
31875 3' -57.6 NC_006938.1 + 10659 0.67 0.558336
Target:  5'- aGCUUCcgGAUGGUGUUgcuGGGaCCGUCCg -3'
miRNA:   3'- cUGGAG--CUGCCACAGu--UCC-GGCAGGa -5'
31875 3' -57.6 NC_006938.1 + 10712 0.67 0.54786
Target:  5'- cGCCU-GACGGUGUCGGGcGUgGUCa- -3'
miRNA:   3'- cUGGAgCUGCCACAGUUC-CGgCAGga -5'
31875 3' -57.6 NC_006938.1 + 50315 0.67 0.54786
Target:  5'- cGGCCUggaUGGCGGUGUCGAcaaagccaGCCGgugCCUg -3'
miRNA:   3'- -CUGGA---GCUGCCACAGUUc-------CGGCa--GGA- -5'
31875 3' -57.6 NC_006938.1 + 35583 0.68 0.527101
Target:  5'- cGACCgcgCGACuGGaggcacUGaUCAAGGCCGUCa- -3'
miRNA:   3'- -CUGGa--GCUG-CC------AC-AGUUCCGGCAGga -5'
31875 3' -57.6 NC_006938.1 + 4284 0.71 0.35325
Target:  5'- gGAgCUCGGCGGUcagcagggucucgauGUCGGaGCCGUCCg -3'
miRNA:   3'- -CUgGAGCUGCCA---------------CAGUUcCGGCAGGa -5'
31875 3' -57.6 NC_006938.1 + 45982 0.71 0.349979
Target:  5'- gGACCUCGAagucCGccGUCAgcgaggacaGGGCCGUCCg -3'
miRNA:   3'- -CUGGAGCU----GCcaCAGU---------UCCGGCAGGa -5'
31875 3' -57.6 NC_006938.1 + 42928 0.72 0.296262
Target:  5'- cAUCUCGAgGGUGUU--GGCUGUCCa -3'
miRNA:   3'- cUGGAGCUgCCACAGuuCCGGCAGGa -5'
31875 3' -57.6 NC_006938.1 + 12237 0.73 0.282139
Target:  5'- --aCUCGAUGGUGUC---GCCGUCCUc -3'
miRNA:   3'- cugGAGCUGCCACAGuucCGGCAGGA- -5'
31875 3' -57.6 NC_006938.1 + 14085 0.79 0.109743
Target:  5'- cGugCUCGACcGUGUCAAGGUCGUCgCUc -3'
miRNA:   3'- -CugGAGCUGcCACAGUUCCGGCAG-GA- -5'
31875 3' -57.6 NC_006938.1 + 40773 1.06 0.001135
Target:  5'- gGACCUCGACGGUGUCAAGGCCGUCCUc -3'
miRNA:   3'- -CUGGAGCUGCCACAGUUCCGGCAGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.