miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31876 5' -63 NC_006938.1 + 1816 0.66 0.410013
Target:  5'- uGUCCGGGCUucagaccuacacCGGCUCuGACUCGggcaucuucCCCCa -3'
miRNA:   3'- -CGGGUUCGA------------GCCGAG-CUGGGC---------GGGGc -5'
31876 5' -63 NC_006938.1 + 46684 0.66 0.410013
Target:  5'- uGCUCAAGCgagcggagcaggUCGcGCUCGucgcACCCGgCUCGg -3'
miRNA:   3'- -CGGGUUCG------------AGC-CGAGC----UGGGCgGGGC- -5'
31876 5' -63 NC_006938.1 + 51944 0.66 0.410013
Target:  5'- --gUggGCUCGGCg-GugCCGCCCg- -3'
miRNA:   3'- cggGuuCGAGCCGagCugGGCGGGgc -5'
31876 5' -63 NC_006938.1 + 34435 0.66 0.401357
Target:  5'- uGCCUcgguGGCUCGGCgUGACCaucucuCCCUGg -3'
miRNA:   3'- -CGGGu---UCGAGCCGaGCUGGgc----GGGGC- -5'
31876 5' -63 NC_006938.1 + 23786 0.66 0.392819
Target:  5'- cGCUCGAGCaucUCGGC-CaugCCGCCCUGg -3'
miRNA:   3'- -CGGGUUCG---AGCCGaGcugGGCGGGGC- -5'
31876 5' -63 NC_006938.1 + 46077 0.66 0.392819
Target:  5'- gGCCCAGGCagaCGGCaCGGCCgGaaacgacaucCCCCu -3'
miRNA:   3'- -CGGGUUCGa--GCCGaGCUGGgC----------GGGGc -5'
31876 5' -63 NC_006938.1 + 10792 0.66 0.392819
Target:  5'- cGCCCGAcaccgucaggcGCUCGGUggCGAggaUUGCCCCu -3'
miRNA:   3'- -CGGGUU-----------CGAGCCGa-GCUg--GGCGGGGc -5'
31876 5' -63 NC_006938.1 + 32717 0.66 0.392819
Target:  5'- gGCUgGAGCUCGaaguggaaCUUGACCacguuguGCCCCGg -3'
miRNA:   3'- -CGGgUUCGAGCc-------GAGCUGGg------CGGGGC- -5'
31876 5' -63 NC_006938.1 + 23715 0.66 0.391125
Target:  5'- uGCUCGAGCgcgcccugagUGGUgccgcgaacaacUGACCCGUCCCGg -3'
miRNA:   3'- -CGGGUUCGa---------GCCGa-----------GCUGGGCGGGGC- -5'
31876 5' -63 NC_006938.1 + 7662 0.66 0.383563
Target:  5'- cGCCCucggccagguGCUUGGCcagCGuggucuuGCCCGuCCCCGc -3'
miRNA:   3'- -CGGGuu--------CGAGCCGa--GC-------UGGGC-GGGGC- -5'
31876 5' -63 NC_006938.1 + 50167 0.66 0.383563
Target:  5'- gGCCUGAGCgUUGGCggGACCUGUggagccaCCCGc -3'
miRNA:   3'- -CGGGUUCG-AGCCGagCUGGGCG-------GGGC- -5'
31876 5' -63 NC_006938.1 + 47840 0.66 0.367921
Target:  5'- cGCCUAcacAGg-CGGCUCGcucCCCGUCCUGc -3'
miRNA:   3'- -CGGGU---UCgaGCCGAGCu--GGGCGGGGC- -5'
31876 5' -63 NC_006938.1 + 19507 0.66 0.359866
Target:  5'- uGCCaguaCUCGGCUUcACCCGCCUgGc -3'
miRNA:   3'- -CGGguucGAGCCGAGcUGGGCGGGgC- -5'
31876 5' -63 NC_006938.1 + 37260 0.67 0.344129
Target:  5'- uGCCCAugggAGCggCGGCgcuaguggcgCGACUCGUUCCa -3'
miRNA:   3'- -CGGGU----UCGa-GCCGa---------GCUGGGCGGGGc -5'
31876 5' -63 NC_006938.1 + 59230 0.67 0.344129
Target:  5'- uGCCaggaCAGGCgCGGuCUCGGUCUGUCCCGa -3'
miRNA:   3'- -CGG----GUUCGaGCC-GAGCUGGGCGGGGC- -5'
31876 5' -63 NC_006938.1 + 61659 0.67 0.344129
Target:  5'- uGCCCGAGauguugaacgcUUCGGCggcgCGGCCCGgaCCUCu -3'
miRNA:   3'- -CGGGUUC-----------GAGCCGa---GCUGGGC--GGGGc -5'
31876 5' -63 NC_006938.1 + 17718 0.67 0.344129
Target:  5'- -gCCGAGgUUGGCUcCGACCagcuCCCCGu -3'
miRNA:   3'- cgGGUUCgAGCCGA-GCUGGgc--GGGGC- -5'
31876 5' -63 NC_006938.1 + 34517 0.67 0.336449
Target:  5'- aGCCCAAGgaggggCGGCUgGuCUgGCUCCGg -3'
miRNA:   3'- -CGGGUUCga----GCCGAgCuGGgCGGGGC- -5'
31876 5' -63 NC_006938.1 + 6213 0.67 0.328893
Target:  5'- aGCCCGuGGCUcCGGCauagUCGcCCCauGCCUCGg -3'
miRNA:   3'- -CGGGU-UCGA-GCCG----AGCuGGG--CGGGGC- -5'
31876 5' -63 NC_006938.1 + 7058 0.67 0.314162
Target:  5'- aGCCUggGCgucgcccCGGCUCcaccuCCCuCCCCGa -3'
miRNA:   3'- -CGGGuuCGa------GCCGAGcu---GGGcGGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.