miRNA display CGI


Results 1 - 20 of 21 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31877 3' -58.5 NC_006938.1 + 12195 0.66 0.570862
Target:  5'- gGGCCUgcgagccaggacGCUUCGGGUUcuCGUCGGCGg -3'
miRNA:   3'- -UUGGA------------CGGGGCCUAGuuGCAGCCGUg -5'
31877 3' -58.5 NC_006938.1 + 39705 0.66 0.569798
Target:  5'- cGCCUGCCUgGGcucggcugugaugGUCAGCGUgccaguggCGGCGa -3'
miRNA:   3'- uUGGACGGGgCC-------------UAGUUGCA--------GCCGUg -5'
31877 3' -58.5 NC_006938.1 + 55365 0.66 0.560245
Target:  5'- uGACCuUGCgCCGGGU-GGCGUgGGCGu -3'
miRNA:   3'- -UUGG-ACGgGGCCUAgUUGCAgCCGUg -5'
31877 3' -58.5 NC_006938.1 + 55444 0.66 0.549685
Target:  5'- aGAUCgGCUuccucaUCGGGUCcguCGUCGGCACa -3'
miRNA:   3'- -UUGGaCGG------GGCCUAGuu-GCAGCCGUG- -5'
31877 3' -58.5 NC_006938.1 + 23767 0.66 0.549685
Target:  5'- uGCC-GCCCUGGc-CGACGucgcgcugcuUCGGCACg -3'
miRNA:   3'- uUGGaCGGGGCCuaGUUGC----------AGCCGUG- -5'
31877 3' -58.5 NC_006938.1 + 61401 0.66 0.539186
Target:  5'- gAugUUGCCCUGGAagGugGUCGcGUAg -3'
miRNA:   3'- -UugGACGGGGCCUagUugCAGC-CGUg -5'
31877 3' -58.5 NC_006938.1 + 42087 0.67 0.512228
Target:  5'- -uCCUGCCCCuGccacucuccugcugcAUCuuCGUCGGCAa -3'
miRNA:   3'- uuGGACGGGGcC---------------UAGuuGCAGCCGUg -5'
31877 3' -58.5 NC_006938.1 + 50980 0.67 0.497944
Target:  5'- cACCgUGCUgCGGAaCAACGuccugcaggcagUCGGCGCg -3'
miRNA:   3'- uUGG-ACGGgGCCUaGUUGC------------AGCCGUG- -5'
31877 3' -58.5 NC_006938.1 + 41960 0.67 0.465995
Target:  5'- gGACCcgGCUCguucggcaCGGAgcgcaucaugggCGACGUCGGCACg -3'
miRNA:   3'- -UUGGa-CGGG--------GCCUa-----------GUUGCAGCCGUG- -5'
31877 3' -58.5 NC_006938.1 + 33954 0.68 0.458174
Target:  5'- gAugCUGCUccgCCGGAUCAACGagGaGCAg -3'
miRNA:   3'- -UugGACGG---GGCCUAGUUGCagC-CGUg -5'
31877 3' -58.5 NC_006938.1 + 51110 0.68 0.438934
Target:  5'- cGGCggagGCCCCGGuggCAGCGUCGaacGCGCc -3'
miRNA:   3'- -UUGga--CGGGGCCua-GUUGCAGC---CGUG- -5'
31877 3' -58.5 NC_006938.1 + 59608 0.68 0.429489
Target:  5'- gAGCCUGgCCCGGA-CGAgGcUGGCAUc -3'
miRNA:   3'- -UUGGACgGGGCCUaGUUgCaGCCGUG- -5'
31877 3' -58.5 NC_006938.1 + 7286 0.68 0.410964
Target:  5'- -cCCUGCgCCUGG-UCAACG-CGGaCGCg -3'
miRNA:   3'- uuGGACG-GGGCCuAGUUGCaGCC-GUG- -5'
31877 3' -58.5 NC_006938.1 + 47944 0.69 0.401889
Target:  5'- gGGCCUGa-CCGGugacgcguUCAACG-CGGCACa -3'
miRNA:   3'- -UUGGACggGGCCu-------AGUUGCaGCCGUG- -5'
31877 3' -58.5 NC_006938.1 + 55948 0.7 0.350197
Target:  5'- cGACCUGCCgCUGGAg-AACuUCGGCAa -3'
miRNA:   3'- -UUGGACGG-GGCCUagUUGcAGCCGUg -5'
31877 3' -58.5 NC_006938.1 + 55532 0.7 0.350197
Target:  5'- cGACCUcuccGUCUCGGcGUCGACGUaUGGCACu -3'
miRNA:   3'- -UUGGA----CGGGGCC-UAGUUGCA-GCCGUG- -5'
31877 3' -58.5 NC_006938.1 + 36537 0.7 0.342054
Target:  5'- cGACCUGgCCCGucgcgaGACGUCGGCGu -3'
miRNA:   3'- -UUGGACgGGGCcuag--UUGCAGCCGUg -5'
31877 3' -58.5 NC_006938.1 + 20775 0.7 0.342054
Target:  5'- cGGCCUGuCCCUGGuucUCAccACGgcggCGGCGCc -3'
miRNA:   3'- -UUGGAC-GGGGCCu--AGU--UGCa---GCCGUG- -5'
31877 3' -58.5 NC_006938.1 + 34920 0.71 0.274983
Target:  5'- cGACCUGgUCC-GAUCAuggccgcgaagaACGUCGGCGCu -3'
miRNA:   3'- -UUGGACgGGGcCUAGU------------UGCAGCCGUG- -5'
31877 3' -58.5 NC_006938.1 + 7858 0.75 0.14711
Target:  5'- uAUCUGCgCCUGGGUCAGCGUCuGGCu- -3'
miRNA:   3'- uUGGACG-GGGCCUAGUUGCAG-CCGug -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.