Results 1 - 20 of 21 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31877 | 3' | -58.5 | NC_006938.1 | + | 12195 | 0.66 | 0.570862 |
Target: 5'- gGGCCUgcgagccaggacGCUUCGGGUUcuCGUCGGCGg -3' miRNA: 3'- -UUGGA------------CGGGGCCUAGuuGCAGCCGUg -5' |
|||||||
31877 | 3' | -58.5 | NC_006938.1 | + | 39705 | 0.66 | 0.569798 |
Target: 5'- cGCCUGCCUgGGcucggcugugaugGUCAGCGUgccaguggCGGCGa -3' miRNA: 3'- uUGGACGGGgCC-------------UAGUUGCA--------GCCGUg -5' |
|||||||
31877 | 3' | -58.5 | NC_006938.1 | + | 55365 | 0.66 | 0.560245 |
Target: 5'- uGACCuUGCgCCGGGU-GGCGUgGGCGu -3' miRNA: 3'- -UUGG-ACGgGGCCUAgUUGCAgCCGUg -5' |
|||||||
31877 | 3' | -58.5 | NC_006938.1 | + | 55444 | 0.66 | 0.549685 |
Target: 5'- aGAUCgGCUuccucaUCGGGUCcguCGUCGGCACa -3' miRNA: 3'- -UUGGaCGG------GGCCUAGuu-GCAGCCGUG- -5' |
|||||||
31877 | 3' | -58.5 | NC_006938.1 | + | 23767 | 0.66 | 0.549685 |
Target: 5'- uGCC-GCCCUGGc-CGACGucgcgcugcuUCGGCACg -3' miRNA: 3'- uUGGaCGGGGCCuaGUUGC----------AGCCGUG- -5' |
|||||||
31877 | 3' | -58.5 | NC_006938.1 | + | 61401 | 0.66 | 0.539186 |
Target: 5'- gAugUUGCCCUGGAagGugGUCGcGUAg -3' miRNA: 3'- -UugGACGGGGCCUagUugCAGC-CGUg -5' |
|||||||
31877 | 3' | -58.5 | NC_006938.1 | + | 42087 | 0.67 | 0.512228 |
Target: 5'- -uCCUGCCCCuGccacucuccugcugcAUCuuCGUCGGCAa -3' miRNA: 3'- uuGGACGGGGcC---------------UAGuuGCAGCCGUg -5' |
|||||||
31877 | 3' | -58.5 | NC_006938.1 | + | 50980 | 0.67 | 0.497944 |
Target: 5'- cACCgUGCUgCGGAaCAACGuccugcaggcagUCGGCGCg -3' miRNA: 3'- uUGG-ACGGgGCCUaGUUGC------------AGCCGUG- -5' |
|||||||
31877 | 3' | -58.5 | NC_006938.1 | + | 41960 | 0.67 | 0.465995 |
Target: 5'- gGACCcgGCUCguucggcaCGGAgcgcaucaugggCGACGUCGGCACg -3' miRNA: 3'- -UUGGa-CGGG--------GCCUa-----------GUUGCAGCCGUG- -5' |
|||||||
31877 | 3' | -58.5 | NC_006938.1 | + | 33954 | 0.68 | 0.458174 |
Target: 5'- gAugCUGCUccgCCGGAUCAACGagGaGCAg -3' miRNA: 3'- -UugGACGG---GGCCUAGUUGCagC-CGUg -5' |
|||||||
31877 | 3' | -58.5 | NC_006938.1 | + | 51110 | 0.68 | 0.438934 |
Target: 5'- cGGCggagGCCCCGGuggCAGCGUCGaacGCGCc -3' miRNA: 3'- -UUGga--CGGGGCCua-GUUGCAGC---CGUG- -5' |
|||||||
31877 | 3' | -58.5 | NC_006938.1 | + | 59608 | 0.68 | 0.429489 |
Target: 5'- gAGCCUGgCCCGGA-CGAgGcUGGCAUc -3' miRNA: 3'- -UUGGACgGGGCCUaGUUgCaGCCGUG- -5' |
|||||||
31877 | 3' | -58.5 | NC_006938.1 | + | 7286 | 0.68 | 0.410964 |
Target: 5'- -cCCUGCgCCUGG-UCAACG-CGGaCGCg -3' miRNA: 3'- uuGGACG-GGGCCuAGUUGCaGCC-GUG- -5' |
|||||||
31877 | 3' | -58.5 | NC_006938.1 | + | 47944 | 0.69 | 0.401889 |
Target: 5'- gGGCCUGa-CCGGugacgcguUCAACG-CGGCACa -3' miRNA: 3'- -UUGGACggGGCCu-------AGUUGCaGCCGUG- -5' |
|||||||
31877 | 3' | -58.5 | NC_006938.1 | + | 55948 | 0.7 | 0.350197 |
Target: 5'- cGACCUGCCgCUGGAg-AACuUCGGCAa -3' miRNA: 3'- -UUGGACGG-GGCCUagUUGcAGCCGUg -5' |
|||||||
31877 | 3' | -58.5 | NC_006938.1 | + | 55532 | 0.7 | 0.350197 |
Target: 5'- cGACCUcuccGUCUCGGcGUCGACGUaUGGCACu -3' miRNA: 3'- -UUGGA----CGGGGCC-UAGUUGCA-GCCGUG- -5' |
|||||||
31877 | 3' | -58.5 | NC_006938.1 | + | 36537 | 0.7 | 0.342054 |
Target: 5'- cGACCUGgCCCGucgcgaGACGUCGGCGu -3' miRNA: 3'- -UUGGACgGGGCcuag--UUGCAGCCGUg -5' |
|||||||
31877 | 3' | -58.5 | NC_006938.1 | + | 20775 | 0.7 | 0.342054 |
Target: 5'- cGGCCUGuCCCUGGuucUCAccACGgcggCGGCGCc -3' miRNA: 3'- -UUGGAC-GGGGCCu--AGU--UGCa---GCCGUG- -5' |
|||||||
31877 | 3' | -58.5 | NC_006938.1 | + | 34920 | 0.71 | 0.274983 |
Target: 5'- cGACCUGgUCC-GAUCAuggccgcgaagaACGUCGGCGCu -3' miRNA: 3'- -UUGGACgGGGcCUAGU------------UGCAGCCGUG- -5' |
|||||||
31877 | 3' | -58.5 | NC_006938.1 | + | 7858 | 0.75 | 0.14711 |
Target: 5'- uAUCUGCgCCUGGGUCAGCGUCuGGCu- -3' miRNA: 3'- uUGGACG-GGGCCUAGUUGCAG-CCGug -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home