miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31878 3' -59 NC_006938.1 + 1657 0.66 0.519821
Target:  5'- aGGGGCCGACcuccgacgacaaGGACaAGGCCUg-GUgGg -3'
miRNA:   3'- gUCCCGGUUG------------CCUG-UCCGGAgaCAgC- -5'
31878 3' -59 NC_006938.1 + 54512 0.67 0.499579
Target:  5'- uCAGGGCCGcgaGGACAgugguGGCCUCgacucCGg -3'
miRNA:   3'- -GUCCCGGUug-CCUGU-----CCGGAGaca--GC- -5'
31878 3' -59 NC_006938.1 + 55738 0.67 0.499579
Target:  5'- uCGGGGCU---GGACcGGCCgacgCUGUCu -3'
miRNA:   3'- -GUCCCGGuugCCUGuCCGGa---GACAGc -5'
31878 3' -59 NC_006938.1 + 28349 0.67 0.469899
Target:  5'- cCGGGGCCAA-GGugAuGGCUggacagCUGUCc -3'
miRNA:   3'- -GUCCCGGUUgCCugU-CCGGa-----GACAGc -5'
31878 3' -59 NC_006938.1 + 55906 0.67 0.460206
Target:  5'- cCAGGuGCC--CGGACAccguGGCCUCUGcuacaUCGu -3'
miRNA:   3'- -GUCC-CGGuuGCCUGU----CCGGAGAC-----AGC- -5'
31878 3' -59 NC_006938.1 + 4494 0.67 0.460206
Target:  5'- cCAGGG-CAGCGGugaGCAGGUCgaUGUCGc -3'
miRNA:   3'- -GUCCCgGUUGCC---UGUCCGGagACAGC- -5'
31878 3' -59 NC_006938.1 + 4970 0.67 0.460206
Target:  5'- aGGGGCUu-CGGAUugaaGGGCUUCgccGUCGg -3'
miRNA:   3'- gUCCCGGuuGCCUG----UCCGGAGa--CAGC- -5'
31878 3' -59 NC_006938.1 + 23762 0.68 0.450619
Target:  5'- gAGGGUCAGaCGGA-GGGCCggUGUCa -3'
miRNA:   3'- gUCCCGGUU-GCCUgUCCGGagACAGc -5'
31878 3' -59 NC_006938.1 + 21658 0.68 0.422538
Target:  5'- -uGGGCC-GCGcGCGGGUCcagCUGUCGg -3'
miRNA:   3'- guCCCGGuUGCcUGUCCGGa--GACAGC- -5'
31878 3' -59 NC_006938.1 + 11219 0.68 0.422538
Target:  5'- uGGGG--GACGGGCGGGUCggUGUCGg -3'
miRNA:   3'- gUCCCggUUGCCUGUCCGGagACAGC- -5'
31878 3' -59 NC_006938.1 + 5343 0.7 0.344989
Target:  5'- --cGGCCAcUGGACAGGCCUC-GUa- -3'
miRNA:   3'- gucCCGGUuGCCUGUCCGGAGaCAgc -5'
31878 3' -59 NC_006938.1 + 8215 0.7 0.321512
Target:  5'- aUAGGaGCCcAgGGGCAGaCCUCUGUCc -3'
miRNA:   3'- -GUCC-CGGuUgCCUGUCcGGAGACAGc -5'
31878 3' -59 NC_006938.1 + 42885 0.71 0.2921
Target:  5'- cUAGGGCCca-GGACAGGCCUUgccUCc -3'
miRNA:   3'- -GUCCCGGuugCCUGUCCGGAGac-AGc -5'
31878 3' -59 NC_006938.1 + 41831 0.73 0.211054
Target:  5'- -nGGGCCGACGGuCAacaccGG-CUCUGUCGg -3'
miRNA:   3'- guCCCGGUUGCCuGU-----CCgGAGACAGC- -5'
31878 3' -59 NC_006938.1 + 53454 0.76 0.131286
Target:  5'- cCAGGuuGUCAACGGAgAGGCCggucuugCUGUCGa -3'
miRNA:   3'- -GUCC--CGGUUGCCUgUCCGGa------GACAGC- -5'
31878 3' -59 NC_006938.1 + 41806 1.09 0.000541
Target:  5'- gCAGGGCCAACGGACAGGCCUCUGUCGg -3'
miRNA:   3'- -GUCCCGGUUGCCUGUCCGGAGACAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.