Results 1 - 6 of 6 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 31878 | 5' | -57.8 | NC_006938.1 | + | 55718 | 0.66 | 0.574715 |
|
Target: 5'- uGUgGACA-UGGCcCUGUCcuucgGGGCUGGAc -3' miRNA: 3'- -CAgUUGUgGCCGaGACAG-----CCCGACCU- -5' |
|||||||
| 31878 | 5' | -57.8 | NC_006938.1 | + | 28656 | 0.67 | 0.553528 |
|
Target: 5'- -aCGugGCUGgaGCUCcGUCGcGGCUGGGa -3' miRNA: 3'- caGUugUGGC--CGAGaCAGC-CCGACCU- -5' |
|||||||
| 31878 | 5' | -57.8 | NC_006938.1 | + | 26384 | 0.67 | 0.553528 |
|
Target: 5'- -gCAACccuUCGuCUCcuUGUCGGGCUGGAu -3' miRNA: 3'- caGUUGu--GGCcGAG--ACAGCCCGACCU- -5' |
|||||||
| 31878 | 5' | -57.8 | NC_006938.1 | + | 7558 | 0.7 | 0.361765 |
|
Target: 5'- cUCAGgGCCGuGUUCUGUUGGGCUc-- -3' miRNA: 3'- cAGUUgUGGC-CGAGACAGCCCGAccu -5' |
|||||||
| 31878 | 5' | -57.8 | NC_006938.1 | + | 1825 | 0.73 | 0.2329 |
|
Target: 5'- uUCAgaccuACACCGGCUCUGacUCGGGCa--- -3' miRNA: 3'- cAGU-----UGUGGCCGAGAC--AGCCCGaccu -5' |
|||||||
| 31878 | 5' | -57.8 | NC_006938.1 | + | 41840 | 1.08 | 0.000717 |
|
Target: 5'- gGUCAACACCGGCUCUGUCGGGCUGGAg -3' miRNA: 3'- -CAGUUGUGGCCGAGACAGCCCGACCU- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home