miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31879 3' -56.2 NC_006938.1 + 48383 0.66 0.72392
Target:  5'- aCCgUCGGCACUGucuccacgauCGAGGCGGccacggCCUa- -3'
miRNA:   3'- -GG-AGUCGUGAU----------GCUCCGCCaa----GGGag -5'
31879 3' -56.2 NC_006938.1 + 10269 0.66 0.713433
Target:  5'- uCCUCGGCcgugacCUGgucCGAGGUcuUUCCCUCg -3'
miRNA:   3'- -GGAGUCGu-----GAU---GCUCCGccAAGGGAG- -5'
31879 3' -56.2 NC_006938.1 + 36249 0.66 0.713433
Target:  5'- aCUaCGGCAgUugaagugaaGAGGCGGgaucggUCCCUCc -3'
miRNA:   3'- gGA-GUCGUgAug-------CUCCGCCa-----AGGGAG- -5'
31879 3' -56.2 NC_006938.1 + 12392 0.66 0.71238
Target:  5'- cCCUCggAGCGcCUGCGAuagaucuGGUGGcgcUCCCUUg -3'
miRNA:   3'- -GGAG--UCGU-GAUGCU-------CCGCCa--AGGGAG- -5'
31879 3' -56.2 NC_006938.1 + 2568 0.66 0.689037
Target:  5'- cCCUgCAGCACgcCGGGGUcuccaggcagguccGGUUCCUg- -3'
miRNA:   3'- -GGA-GUCGUGauGCUCCG--------------CCAAGGGag -5'
31879 3' -56.2 NC_006938.1 + 51843 0.66 0.68155
Target:  5'- cUCUCcguGGCACcaucgACGAGGUGGagaaCCUCa -3'
miRNA:   3'- -GGAG---UCGUGa----UGCUCCGCCaag-GGAG- -5'
31879 3' -56.2 NC_006938.1 + 51358 0.68 0.563143
Target:  5'- aUUCGccGCGCUGC-AGGCGGUcuUCCCg- -3'
miRNA:   3'- gGAGU--CGUGAUGcUCCGCCA--AGGGag -5'
31879 3' -56.2 NC_006938.1 + 42495 1.12 0.000654
Target:  5'- uCCUCAGCACUACGAGGCGGUUCCCUCg -3'
miRNA:   3'- -GGAGUCGUGAUGCUCCGCCAAGGGAG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.