miRNA display CGI


Results 21 - 40 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31879 5' -60.8 NC_006938.1 + 55795 0.68 0.350812
Target:  5'- aCGACGCCACCaagGCCCC-ACCcucucgcCUGUc -3'
miRNA:   3'- aGCUGCGGUGG---CGGGGcUGGu------GACAc -5'
31879 5' -60.8 NC_006938.1 + 4256 0.69 0.342913
Target:  5'- gUCGGaGCCGuCCGCCCgGACCAUg--- -3'
miRNA:   3'- -AGCUgCGGU-GGCGGGgCUGGUGacac -5'
31879 5' -60.8 NC_006938.1 + 51565 0.69 0.342913
Target:  5'- cUCGACuGCC-CCgGCUCCGGCCGCg--- -3'
miRNA:   3'- -AGCUG-CGGuGG-CGGGGCUGGUGacac -5'
31879 5' -60.8 NC_006938.1 + 39124 0.69 0.335143
Target:  5'- aUCGGCuCCGCCaagGUCCCGACCGagGUGg -3'
miRNA:   3'- -AGCUGcGGUGG---CGGGGCUGGUgaCAC- -5'
31879 5' -60.8 NC_006938.1 + 15081 0.69 0.30536
Target:  5'- aCGACGCC-CUGCCCCGAggucUCGCg--- -3'
miRNA:   3'- aGCUGCGGuGGCGGGGCU----GGUGacac -5'
31879 5' -60.8 NC_006938.1 + 5362 0.7 0.298239
Target:  5'- gUGugGUCAacUCGCCCCucGGCCACUGg- -3'
miRNA:   3'- aGCugCGGU--GGCGGGG--CUGGUGACac -5'
31879 5' -60.8 NC_006938.1 + 98 0.7 0.284384
Target:  5'- gUCGA-GCCACCGCCa-G-UCACUGUGa -3'
miRNA:   3'- -AGCUgCGGUGGCGGggCuGGUGACAC- -5'
31879 5' -60.8 NC_006938.1 + 10728 0.7 0.277649
Target:  5'- gCGugGUCAUCGCCCCGuACCAg---- -3'
miRNA:   3'- aGCugCGGUGGCGGGGC-UGGUgacac -5'
31879 5' -60.8 NC_006938.1 + 24629 0.7 0.277649
Target:  5'- cCGGCGCUA-CGaCCCCGGCCACg--- -3'
miRNA:   3'- aGCUGCGGUgGC-GGGGCUGGUGacac -5'
31879 5' -60.8 NC_006938.1 + 51723 0.7 0.277649
Target:  5'- gUUGAccuCGCCgACCGCCCCGuCCACa--- -3'
miRNA:   3'- -AGCU---GCGG-UGGCGGGGCuGGUGacac -5'
31879 5' -60.8 NC_006938.1 + 46407 0.7 0.271042
Target:  5'- -gGACGUgACCGCCCUG-CCACUuggaucgaucGUGg -3'
miRNA:   3'- agCUGCGgUGGCGGGGCuGGUGA----------CAC- -5'
31879 5' -60.8 NC_006938.1 + 42074 0.71 0.258209
Target:  5'- uUCGGCGCUGCCauccuGCCCCuGCCACUc-- -3'
miRNA:   3'- -AGCUGCGGUGG-----CGGGGcUGGUGAcac -5'
31879 5' -60.8 NC_006938.1 + 59423 0.71 0.234037
Target:  5'- gUGGCGCCGCCGgaCCCGGCCgACUu-- -3'
miRNA:   3'- aGCUGCGGUGGCg-GGGCUGG-UGAcac -5'
31879 5' -60.8 NC_006938.1 + 29670 0.71 0.228299
Target:  5'- cUCGACGa-GCCGCCCCuGCCGCcGUa -3'
miRNA:   3'- -AGCUGCggUGGCGGGGcUGGUGaCAc -5'
31879 5' -60.8 NC_006938.1 + 1723 0.72 0.206527
Target:  5'- aCGACGCCAUggacaGCUCCGGCCGgUGg- -3'
miRNA:   3'- aGCUGCGGUGg----CGGGGCUGGUgACac -5'
31879 5' -60.8 NC_006938.1 + 37517 0.72 0.196329
Target:  5'- cUCGAgGCCGCCGCCgCUGGCaaGCUGg- -3'
miRNA:   3'- -AGCUgCGGUGGCGG-GGCUGg-UGACac -5'
31879 5' -60.8 NC_006938.1 + 11964 0.74 0.143976
Target:  5'- cCG-UGCCACCGCCUCaGCCGCgUGUGg -3'
miRNA:   3'- aGCuGCGGUGGCGGGGcUGGUG-ACAC- -5'
31879 5' -60.8 NC_006938.1 + 52497 0.75 0.122876
Target:  5'- gUUGuuGCCACCGCCCUGGCC-CcGUGg -3'
miRNA:   3'- -AGCugCGGUGGCGGGGCUGGuGaCAC- -5'
31879 5' -60.8 NC_006938.1 + 15733 0.76 0.107524
Target:  5'- cUCGACGCCgACCGCgCUGGCCACg--- -3'
miRNA:   3'- -AGCUGCGG-UGGCGgGGCUGGUGacac -5'
31879 5' -60.8 NC_006938.1 + 61678 0.78 0.084335
Target:  5'- uUCGGCGgCGCgGCCCgGACCuCUGUGa -3'
miRNA:   3'- -AGCUGCgGUGgCGGGgCUGGuGACAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.