miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31881 3' -59.6 NC_006938.1 + 21763 0.66 0.513409
Target:  5'- uGCaGGGCCUGGacccggaCAAcCCGGaCCGGUAUc -3'
miRNA:   3'- -CG-CCCGGACUg------GUU-GGCUaGGCCGUA- -5'
31881 3' -59.6 NC_006938.1 + 18607 0.66 0.483386
Target:  5'- -aGGGCCgcccagaGGCC-ACCGucGUCCGGCc- -3'
miRNA:   3'- cgCCCGGa------CUGGuUGGC--UAGGCCGua -5'
31881 3' -59.6 NC_006938.1 + 34046 0.67 0.473566
Target:  5'- aGCGGGuCCaGGCCu-CCGggCCGaGCAc -3'
miRNA:   3'- -CGCCC-GGaCUGGuuGGCuaGGC-CGUa -5'
31881 3' -59.6 NC_006938.1 + 21656 0.67 0.454233
Target:  5'- cGUGGGCCgcgcgcgGGuCCAGCUG-UCgGGCAa -3'
miRNA:   3'- -CGCCCGGa------CU-GGUUGGCuAGgCCGUa -5'
31881 3' -59.6 NC_006938.1 + 50245 0.68 0.416903
Target:  5'- cCaGGCCgggGuCCGGCgGGUCCGGCGc -3'
miRNA:   3'- cGcCCGGa--CuGGUUGgCUAGGCCGUa -5'
31881 3' -59.6 NC_006938.1 + 47942 0.68 0.407866
Target:  5'- aCGGGCCUGACCGgugACgCGuUCaacgCGGCAc -3'
miRNA:   3'- cGCCCGGACUGGU---UG-GCuAG----GCCGUa -5'
31881 3' -59.6 NC_006938.1 + 29070 0.68 0.390165
Target:  5'- uCGGGCCgUGuCCAuCCGGaCCGGCu- -3'
miRNA:   3'- cGCCCGG-ACuGGUuGGCUaGGCCGua -5'
31881 3' -59.6 NC_006938.1 + 28962 0.68 0.380647
Target:  5'- cGCuGGCCUGGgCGggacagaGCCGGUCCGGa-- -3'
miRNA:   3'- -CGcCCGGACUgGU-------UGGCUAGGCCgua -5'
31881 3' -59.6 NC_006938.1 + 33719 0.69 0.364574
Target:  5'- gGCGGcGUCU-ACCugccACCGAcgUCCGGCAUg -3'
miRNA:   3'- -CGCC-CGGAcUGGu---UGGCU--AGGCCGUA- -5'
31881 3' -59.6 NC_006938.1 + 34741 0.69 0.34817
Target:  5'- gGCGaGGCaCUGACCGugCGcGUCgCGGCc- -3'
miRNA:   3'- -CGC-CCG-GACUGGUugGC-UAG-GCCGua -5'
31881 3' -59.6 NC_006938.1 + 37117 0.69 0.340168
Target:  5'- cCGGGUCaUGucCCGcgcGCCGGUCCGGCu- -3'
miRNA:   3'- cGCCCGG-ACu-GGU---UGGCUAGGCCGua -5'
31881 3' -59.6 NC_006938.1 + 29569 0.69 0.340168
Target:  5'- -aGGGCCUGuGCCAGUCGAUauGGCAg -3'
miRNA:   3'- cgCCCGGAC-UGGUUGGCUAggCCGUa -5'
31881 3' -59.6 NC_006938.1 + 50155 0.69 0.340168
Target:  5'- gGCGGGaCCUGuggaGCCAcCCGcgCCgGGCAc -3'
miRNA:   3'- -CGCCC-GGAC----UGGUuGGCuaGG-CCGUa -5'
31881 3' -59.6 NC_006938.1 + 54444 0.7 0.316967
Target:  5'- -aGGGCCUcGCCGACCaGuAUCCuGGCGUc -3'
miRNA:   3'- cgCCCGGAcUGGUUGG-C-UAGG-CCGUA- -5'
31881 3' -59.6 NC_006938.1 + 2889 0.71 0.261003
Target:  5'- gGCGGGCCgccgGACCuGACuCGAagUCCGaGCGg -3'
miRNA:   3'- -CGCCCGGa---CUGG-UUG-GCU--AGGC-CGUa -5'
31881 3' -59.6 NC_006938.1 + 30138 0.73 0.189482
Target:  5'- cGCGGGCaguugGACCAGCUGGUaccucgagcugggacUCGGCAUg -3'
miRNA:   3'- -CGCCCGga---CUGGUUGGCUA---------------GGCCGUA- -5'
31881 3' -59.6 NC_006938.1 + 16375 0.75 0.147914
Target:  5'- cGCGGGCCaggGGCUGucGCCGAcccagcgcUCCGGCAc -3'
miRNA:   3'- -CGCCCGGa--CUGGU--UGGCU--------AGGCCGUa -5'
31881 3' -59.6 NC_006938.1 + 46197 1.07 0.00062
Target:  5'- cGCGGGCCUGACCAACCGAUCCGGCAUu -3'
miRNA:   3'- -CGCCCGGACUGGUUGGCUAGGCCGUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.