Results 1 - 20 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31881 | 5' | -56.2 | NC_006938.1 | + | 46234 | 1.14 | 0.000402 |
Target: 5'- gGCAUCCCUCUGGACCUCAAGCAGGCCa -3' miRNA: 3'- -CGUAGGGAGACCUGGAGUUCGUCCGG- -5' |
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31881 | 5' | -56.2 | NC_006938.1 | + | 38695 | 0.66 | 0.689962 |
Target: 5'- cGCGUUCUaCUGGACUcggcgUCuc-CAGGCCg -3' miRNA: 3'- -CGUAGGGaGACCUGG-----AGuucGUCCGG- -5' |
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31881 | 5' | -56.2 | NC_006938.1 | + | 37909 | 0.66 | 0.668417 |
Target: 5'- cGCGUCUCa--GGGCggCGAGCGGGCg -3' miRNA: 3'- -CGUAGGGagaCCUGgaGUUCGUCCGg -5' |
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31881 | 5' | -56.2 | NC_006938.1 | + | 5592 | 0.67 | 0.657589 |
Target: 5'- cGCcgCUCUCgaGGccaAgCUCAAGgAGGCCa -3' miRNA: 3'- -CGuaGGGAGa-CC---UgGAGUUCgUCCGG- -5' |
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31881 | 5' | -56.2 | NC_006938.1 | + | 13144 | 0.67 | 0.603301 |
Target: 5'- -gGUCCCgugcaaCUGGAaCgauGGCAGGCCg -3' miRNA: 3'- cgUAGGGa-----GACCUgGaguUCGUCCGG- -5' |
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31881 | 5' | -56.2 | NC_006938.1 | + | 11690 | 0.67 | 0.602217 |
Target: 5'- uGCaAUCaCUUCUGGAacagcccggagaaCCgCGAGCAGGCa -3' miRNA: 3'- -CG-UAG-GGAGACCU-------------GGaGUUCGUCCGg -5' |
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31881 | 5' | -56.2 | NC_006938.1 | + | 47751 | 0.68 | 0.592479 |
Target: 5'- ----aCCUCUGG-CCUCGuGCuggAGGCCu -3' miRNA: 3'- cguagGGAGACCuGGAGUuCG---UCCGG- -5' |
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31881 | 5' | -56.2 | NC_006938.1 | + | 37447 | 0.68 | 0.592479 |
Target: 5'- gGCAUCCCUCggcgucugGGGCgagCUCAaucacgAGgAGGUCa -3' miRNA: 3'- -CGUAGGGAGa-------CCUG---GAGU------UCgUCCGG- -5' |
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31881 | 5' | -56.2 | NC_006938.1 | + | 18171 | 0.68 | 0.592479 |
Target: 5'- gGCAUCCUggUGGAcgcCCUCc-GCGcGGCCg -3' miRNA: 3'- -CGUAGGGagACCU---GGAGuuCGU-CCGG- -5' |
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31881 | 5' | -56.2 | NC_006938.1 | + | 48017 | 0.68 | 0.58169 |
Target: 5'- gGCAUCaCgCUCgacaaGACCUCGGGCGGcGCg -3' miRNA: 3'- -CGUAG-G-GAGac---CUGGAGUUCGUC-CGg -5' |
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31881 | 5' | -56.2 | NC_006938.1 | + | 46175 | 0.68 | 0.58169 |
Target: 5'- cGCAgCCC-CUGGAguuuCCgCGcGCGGGCCu -3' miRNA: 3'- -CGUaGGGaGACCU----GGaGUuCGUCCGG- -5' |
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31881 | 5' | -56.2 | NC_006938.1 | + | 42875 | 0.75 | 0.246959 |
Target: 5'- --cUCCCUCUuucuaGGGCC-CAGGaCAGGCCu -3' miRNA: 3'- cguAGGGAGA-----CCUGGaGUUC-GUCCGG- -5' |
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31881 | 5' | -56.2 | NC_006938.1 | + | 40405 | 0.72 | 0.357107 |
Target: 5'- gGCAUCaa---GGAUCUCAAGCgAGGCCa -3' miRNA: 3'- -CGUAGggagaCCUGGAGUUCG-UCCGG- -5' |
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31881 | 5' | -56.2 | NC_006938.1 | + | 62274 | 0.69 | 0.4873 |
Target: 5'- aGCGUugCCCUgcucCUGGGCUUCGAcgcGCAGGUg -3' miRNA: 3'- -CGUA--GGGA----GACCUGGAGUU---CGUCCGg -5' |
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31881 | 5' | -56.2 | NC_006938.1 | + | 60340 | 0.68 | 0.5496 |
Target: 5'- gGCggCCCUCaGcGCCUCu-GCAGGCa -3' miRNA: 3'- -CGuaGGGAGaCcUGGAGuuCGUCCGg -5' |
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31881 | 5' | -56.2 | NC_006938.1 | + | 20326 | 0.68 | 0.560243 |
Target: 5'- aCAUCCauggcuggCUGGAgCUgAAGCAGGUg -3' miRNA: 3'- cGUAGGga------GACCUgGAgUUCGUCCGg -5' |
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31881 | 5' | -56.2 | NC_006938.1 | + | 8997 | 0.68 | 0.560243 |
Target: 5'- gGC-UCCaUCaUGGAgCgcgcCAAGCAGGCCg -3' miRNA: 3'- -CGuAGGgAG-ACCUgGa---GUUCGUCCGG- -5' |
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31881 | 5' | -56.2 | NC_006938.1 | + | 40760 | 0.68 | 0.560243 |
Target: 5'- cGCAgCCCaaccgGGACCUCGacGGUgucaAGGCCg -3' miRNA: 3'- -CGUaGGGaga--CCUGGAGU--UCG----UCCGG- -5' |
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31881 | 5' | -56.2 | NC_006938.1 | + | 8434 | 0.74 | 0.266494 |
Target: 5'- cGCgAUCCagaUCUGG-CCgUUGAGCAGGCCc -3' miRNA: 3'- -CG-UAGGg--AGACCuGG-AGUUCGUCCGG- -5' |
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31881 | 5' | -56.2 | NC_006938.1 | + | 33909 | 0.66 | 0.689962 |
Target: 5'- aGCGUCCCUCacgauguccgGGACCacggCucGCAG-CCg -3' miRNA: 3'- -CGUAGGGAGa---------CCUGGa---GuuCGUCcGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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