miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31883 5' -56.4 NC_006938.1 + 39905 0.66 0.700659
Target:  5'- -cCACgGAGAcGCUCGCUucggcucguGGGGCgGGg -3'
miRNA:   3'- uaGUGaCUCUaCGAGUGG---------CUCCGgCC- -5'
31883 5' -56.4 NC_006938.1 + 8014 0.66 0.689962
Target:  5'- cGUCAUggGAGGUGgcuucUUCACgGAGGCCa- -3'
miRNA:   3'- -UAGUGa-CUCUAC-----GAGUGgCUCCGGcc -5'
31883 5' -56.4 NC_006938.1 + 53818 0.66 0.679211
Target:  5'- -cCACUGGcacccUGggCACCGAGGCCGc -3'
miRNA:   3'- uaGUGACUcu---ACgaGUGGCUCCGGCc -5'
31883 5' -56.4 NC_006938.1 + 28634 0.66 0.668417
Target:  5'- -cCGCUG-GGUGCUCGaccacgacaCGuGGCUGGa -3'
miRNA:   3'- uaGUGACuCUACGAGUg--------GCuCCGGCC- -5'
31883 5' -56.4 NC_006938.1 + 38485 0.66 0.668417
Target:  5'- gAUCGCUGAcc-GCaUCGCCcuGAcGGCCGGa -3'
miRNA:   3'- -UAGUGACUcuaCG-AGUGG--CU-CCGGCC- -5'
31883 5' -56.4 NC_006938.1 + 24447 0.66 0.668417
Target:  5'- -gCGCUGAgGGUGCUCcCCGuccaGGGaCUGGa -3'
miRNA:   3'- uaGUGACU-CUACGAGuGGC----UCC-GGCC- -5'
31883 5' -56.4 NC_006938.1 + 51332 0.66 0.657589
Target:  5'- gGUCGCUGAaggcGAUGagCGCCGAgauGGCCGu -3'
miRNA:   3'- -UAGUGACU----CUACgaGUGGCU---CCGGCc -5'
31883 5' -56.4 NC_006938.1 + 35662 0.67 0.625008
Target:  5'- -gCGCgagGAGAUGCUguCCGucGCCaGGg -3'
miRNA:   3'- uaGUGa--CUCUACGAguGGCucCGG-CC- -5'
31883 5' -56.4 NC_006938.1 + 40674 0.68 0.560243
Target:  5'- -gCGCaUGAGGUcCUCgACCGAGGCCu- -3'
miRNA:   3'- uaGUG-ACUCUAcGAG-UGGCUCCGGcc -5'
31883 5' -56.4 NC_006938.1 + 41646 0.68 0.53902
Target:  5'- -aCACaGAGAgcgGCUCcaccACCGAgaaguuGGCCGGg -3'
miRNA:   3'- uaGUGaCUCUa--CGAG----UGGCU------CCGGCC- -5'
31883 5' -56.4 NC_006938.1 + 12874 0.69 0.477232
Target:  5'- aAUC-CUGgaccAGgcGCUCGCCGGGGCCu- -3'
miRNA:   3'- -UAGuGAC----UCuaCGAGUGGCUCCGGcc -5'
31883 5' -56.4 NC_006938.1 + 48055 1.08 0.001066
Target:  5'- cAUCACUGAGAUGCUCACCGAGGCCGGu -3'
miRNA:   3'- -UAGUGACUCUACGAGUGGCUCCGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.