miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31884 3' -58 NC_006938.1 + 37134 0.66 0.617155
Target:  5'- uCCCAC-GGUGACAgggGCcgggucaugucccgcGCGCcGGUCCGg -3'
miRNA:   3'- -GGGUGcCCGCUGU---UG---------------UGCGuCCAGGU- -5'
31884 3' -58 NC_006938.1 + 8209 0.66 0.612912
Target:  5'- gCCCAgGGGCaGACcuCuguccucgcggACGCGGGUCg- -3'
miRNA:   3'- -GGGUgCCCG-CUGuuG-----------UGCGUCCAGgu -5'
31884 3' -58 NC_006938.1 + 2151 0.66 0.602317
Target:  5'- -aCugGGGCGACGuGCACGCc--UCCGa -3'
miRNA:   3'- ggGugCCCGCUGU-UGUGCGuccAGGU- -5'
31884 3' -58 NC_006938.1 + 33686 0.67 0.591745
Target:  5'- aCCCACGaGG-GcCAGCAC-CAGGUCa- -3'
miRNA:   3'- -GGGUGC-CCgCuGUUGUGcGUCCAGgu -5'
31884 3' -58 NC_006938.1 + 26138 0.67 0.581205
Target:  5'- gCCACGGGCc---GCGC-CGGGUCUAc -3'
miRNA:   3'- gGGUGCCCGcuguUGUGcGUCCAGGU- -5'
31884 3' -58 NC_006938.1 + 20756 0.67 0.570704
Target:  5'- aCCAC-GGCGGCGGCGCcacaaaGCAgGGUCUc -3'
miRNA:   3'- gGGUGcCCGCUGUUGUG------CGU-CCAGGu -5'
31884 3' -58 NC_006938.1 + 23898 0.67 0.56025
Target:  5'- uUCAaGGGCGugauCGACGCGCGGGcggaCCAc -3'
miRNA:   3'- gGGUgCCCGCu---GUUGUGCGUCCa---GGU- -5'
31884 3' -58 NC_006938.1 + 52714 0.67 0.54985
Target:  5'- aCCCGacgagaGGGUGAUGACggucgucuugaaGCGCGGG-CCAc -3'
miRNA:   3'- -GGGUg-----CCCGCUGUUG------------UGCGUCCaGGU- -5'
31884 3' -58 NC_006938.1 + 37906 0.67 0.53951
Target:  5'- gCCCGCgucucaGGGCGGCgAGCggGCGguGG-CCAg -3'
miRNA:   3'- -GGGUG------CCCGCUG-UUG--UGCguCCaGGU- -5'
31884 3' -58 NC_006938.1 + 62286 0.68 0.529237
Target:  5'- cUCC-UGGGCuuCGACGCGCAGGUg-- -3'
miRNA:   3'- -GGGuGCCCGcuGUUGUGCGUCCAggu -5'
31884 3' -58 NC_006938.1 + 26331 0.68 0.529237
Target:  5'- gCCCAugUGGGCGGCGACACagGCGuGaCCAc -3'
miRNA:   3'- -GGGU--GCCCGCUGUUGUG--CGUcCaGGU- -5'
31884 3' -58 NC_006938.1 + 22547 0.68 0.488929
Target:  5'- gCCCACcuccGCGACAAgGUGCuGGUCCAc -3'
miRNA:   3'- -GGGUGcc--CGCUGUUgUGCGuCCAGGU- -5'
31884 3' -58 NC_006938.1 + 8086 0.69 0.459665
Target:  5'- uCCCaugACGGGCGGgAGCugGgcCGGGUCg- -3'
miRNA:   3'- -GGG---UGCCCGCUgUUGugC--GUCCAGgu -5'
31884 3' -58 NC_006938.1 + 27599 0.69 0.459665
Target:  5'- gCCACGcGGCGcuggaACAACAggaGCGGGUCa- -3'
miRNA:   3'- gGGUGC-CCGC-----UGUUGUg--CGUCCAGgu -5'
31884 3' -58 NC_006938.1 + 34837 0.69 0.440681
Target:  5'- gUC-CGGGCcGCGACGCGCAcGGUCa- -3'
miRNA:   3'- gGGuGCCCGcUGUUGUGCGU-CCAGgu -5'
31884 3' -58 NC_006938.1 + 43241 0.69 0.431357
Target:  5'- gCCUuCGcGGCGaACAGCACGguGGcCCu -3'
miRNA:   3'- -GGGuGC-CCGC-UGUUGUGCguCCaGGu -5'
31884 3' -58 NC_006938.1 + 8366 0.7 0.404097
Target:  5'- aUCGC-GGCGGCgGACGCGCAGGacgCCGg -3'
miRNA:   3'- gGGUGcCCGCUG-UUGUGCGUCCa--GGU- -5'
31884 3' -58 NC_006938.1 + 27328 0.7 0.404097
Target:  5'- cCCCagACGGGCGAg---ACGCuGGUCCGc -3'
miRNA:   3'- -GGG--UGCCCGCUguugUGCGuCCAGGU- -5'
31884 3' -58 NC_006938.1 + 19270 0.71 0.336969
Target:  5'- cUCCACGuccacuuuggaGGgGACAuugaucucCACGCAGGUCCGc -3'
miRNA:   3'- -GGGUGC-----------CCgCUGUu-------GUGCGUCCAGGU- -5'
31884 3' -58 NC_006938.1 + 47003 0.71 0.329171
Target:  5'- gCCaCACGGGUGGCAACgACGCugcccuGGgcggCCGa -3'
miRNA:   3'- -GG-GUGCCCGCUGUUG-UGCGu-----CCa---GGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.