miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31885 3' -51.2 NC_006938.1 + 58777 0.66 0.931415
Target:  5'- ----aGAUCagCGAGGCGGUUgGcCGAGg -3'
miRNA:   3'- uuuugCUAGa-GCUCCGUUAGgC-GCUC- -5'
31885 3' -51.2 NC_006938.1 + 37779 0.66 0.919559
Target:  5'- ---cCGAUCgcaucuUCGAGGU---CCGCGAGg -3'
miRNA:   3'- uuuuGCUAG------AGCUCCGuuaGGCGCUC- -5'
31885 3' -51.2 NC_006938.1 + 51676 0.66 0.919559
Target:  5'- -uGACGcccUCUCuGGGC--UCCGCGAGu -3'
miRNA:   3'- uuUUGCu--AGAGcUCCGuuAGGCGCUC- -5'
31885 3' -51.2 NC_006938.1 + 27331 0.66 0.913196
Target:  5'- cAGACGGg--CGAGacGCuGGUCCGCGAGa -3'
miRNA:   3'- uUUUGCUagaGCUC--CG-UUAGGCGCUC- -5'
31885 3' -51.2 NC_006938.1 + 36632 0.66 0.913196
Target:  5'- cGGAACGccgacGUCUCGcgacGGGCcaGGUCgGCGAGa -3'
miRNA:   3'- -UUUUGC-----UAGAGC----UCCG--UUAGgCGCUC- -5'
31885 3' -51.2 NC_006938.1 + 3837 0.67 0.892389
Target:  5'- -cGACGAg--CGucuuGGUGAUCUGCGAGg -3'
miRNA:   3'- uuUUGCUagaGCu---CCGUUAGGCGCUC- -5'
31885 3' -51.2 NC_006938.1 + 51634 0.67 0.869091
Target:  5'- -uGugGA---CGGGGCGGUCgGCGAGg -3'
miRNA:   3'- uuUugCUagaGCUCCGUUAGgCGCUC- -5'
31885 3' -51.2 NC_006938.1 + 29543 0.67 0.860799
Target:  5'- aGAGGCcGUCgaCGcGGguGUCCGCGAGg -3'
miRNA:   3'- -UUUUGcUAGa-GCuCCguUAGGCGCUC- -5'
31885 3' -51.2 NC_006938.1 + 6347 0.68 0.825208
Target:  5'- -uGGCGGUCUCGucGCuGUCCaCGAGc -3'
miRNA:   3'- uuUUGCUAGAGCucCGuUAGGcGCUC- -5'
31885 3' -51.2 NC_006938.1 + 51233 0.7 0.710862
Target:  5'- -cGACGAUCgCGGccggaauGGCAAUCCGCGc- -3'
miRNA:   3'- uuUUGCUAGaGCU-------CCGUUAGGCGCuc -5'
31885 3' -51.2 NC_006938.1 + 17243 0.72 0.611091
Target:  5'- -uGGCGAUCUCcAGGUccuGUCCgGCGAGg -3'
miRNA:   3'- uuUUGCUAGAGcUCCGu--UAGG-CGCUC- -5'
31885 3' -51.2 NC_006938.1 + 48940 1.06 0.004532
Target:  5'- gAAAACGAUCUCGAGGCAAUCCGCGAGc -3'
miRNA:   3'- -UUUUGCUAGAGCUCCGUUAGGCGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.