Results 1 - 7 of 7 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31885 | 5' | -58.7 | NC_006938.1 | + | 48974 | 1.08 | 0.00073 |
Target: 5'- aGACCCGCUGGAUGUCUCUGGACCGCGc -3' miRNA: 3'- -CUGGGCGACCUACAGAGACCUGGCGC- -5' |
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31885 | 5' | -58.7 | NC_006938.1 | + | 28630 | 0.72 | 0.260319 |
Target: 5'- aGGCCCGCUGGGUGcUCgaccacgacacguggCUGGAgcuccgUCGCGg -3' miRNA: 3'- -CUGGGCGACCUAC-AGa--------------GACCU------GGCGC- -5' |
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31885 | 5' | -58.7 | NC_006938.1 | + | 62035 | 0.72 | 0.272822 |
Target: 5'- gGACCaC-CUGGAgaaUGUUUCUGGACgGCGu -3' miRNA: 3'- -CUGG-GcGACCU---ACAGAGACCUGgCGC- -5' |
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31885 | 5' | -58.7 | NC_006938.1 | + | 50017 | 0.7 | 0.362941 |
Target: 5'- cGCCCGUgUGGGUGgccccgcCUCUGGAaCGCGa -3' miRNA: 3'- cUGGGCG-ACCUACa------GAGACCUgGCGC- -5' |
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31885 | 5' | -58.7 | NC_006938.1 | + | 34117 | 0.68 | 0.462026 |
Target: 5'- gGACCCGCUGGucg-CUCUGGcUCGg- -3' miRNA: 3'- -CUGGGCGACCuacaGAGACCuGGCgc -5' |
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31885 | 5' | -58.7 | NC_006938.1 | + | 41640 | 0.66 | 0.563103 |
Target: 5'- aACCCGCUGcagGUCUCUGGucucagucuUCGCc -3' miRNA: 3'- cUGGGCGACcuaCAGAGACCu--------GGCGc -5' |
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31885 | 5' | -58.7 | NC_006938.1 | + | 46268 | 0.66 | 0.584142 |
Target: 5'- aGGCCCGCgcgcGGAaa-CUCcagGGGCUGCGa -3' miRNA: 3'- -CUGGGCGa---CCUacaGAGa--CCUGGCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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