miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31886 3' -54.6 NC_006938.1 + 33546 0.66 0.796656
Target:  5'- gGCGACGAGAccagauaccgcguccGGUUcgucggcaaCCGUGCCGCc-- -3'
miRNA:   3'- gUGUUGCUCU---------------UCAA---------GGCGCGGCGcua -5'
31886 3' -54.6 NC_006938.1 + 2653 0.66 0.792766
Target:  5'- cCACGGCGAcGAGGgUCCGaacggaaGCCGgGGa -3'
miRNA:   3'- -GUGUUGCU-CUUCaAGGCg------CGGCgCUa -5'
31886 3' -54.6 NC_006938.1 + 61776 0.66 0.761759
Target:  5'- -uCAGCGucgucacAGAGGUccgggCCGCGCCGcCGAa -3'
miRNA:   3'- guGUUGC-------UCUUCAa----GGCGCGGC-GCUa -5'
31886 3' -54.6 NC_006938.1 + 20804 0.67 0.742102
Target:  5'- uGC-ACGAGAAGUgccugaucuaCCGcCGCCGCGc- -3'
miRNA:   3'- gUGuUGCUCUUCAa---------GGC-GCGGCGCua -5'
31886 3' -54.6 NC_006938.1 + 54147 0.67 0.728417
Target:  5'- cCGCuucGCGAGAAGUaccagccacgauugUUCGUGCCGCu-- -3'
miRNA:   3'- -GUGu--UGCUCUUCA--------------AGGCGCGGCGcua -5'
31886 3' -54.6 NC_006938.1 + 58480 0.67 0.720979
Target:  5'- gGgAGCGAGuuGUUCCGCuggGCCaGCGGc -3'
miRNA:   3'- gUgUUGCUCuuCAAGGCG---CGG-CGCUa -5'
31886 3' -54.6 NC_006938.1 + 1303 0.67 0.710279
Target:  5'- gGCGGCcAGAAG-UCCG-GCCGUGAg -3'
miRNA:   3'- gUGUUGcUCUUCaAGGCgCGGCGCUa -5'
31886 3' -54.6 NC_006938.1 + 25480 0.67 0.710279
Target:  5'- gCACAGCuucAAGUaCCGCGaCCGCGAc -3'
miRNA:   3'- -GUGUUGcucUUCAaGGCGC-GGCGCUa -5'
31886 3' -54.6 NC_006938.1 + 51453 0.69 0.622845
Target:  5'- aGCGGCGGGAAGaccgCCugcaGCGCgGCGAa -3'
miRNA:   3'- gUGUUGCUCUUCaa--GG----CGCGgCGCUa -5'
31886 3' -54.6 NC_006938.1 + 26858 0.69 0.600865
Target:  5'- gACGACGAGAuccuggCCGCGUuuCGCGGUc -3'
miRNA:   3'- gUGUUGCUCUucaa--GGCGCG--GCGCUA- -5'
31886 3' -54.6 NC_006938.1 + 26622 0.72 0.424345
Target:  5'- gGCGGCGAGAAGUUCgCcUGCCGCu-- -3'
miRNA:   3'- gUGUUGCUCUUCAAG-GcGCGGCGcua -5'
31886 3' -54.6 NC_006938.1 + 27015 0.79 0.153668
Target:  5'- gCACGGCGAGGAGUgggagcgCCGCGuCCGCGu- -3'
miRNA:   3'- -GUGUUGCUCUUCAa------GGCGC-GGCGCua -5'
31886 3' -54.6 NC_006938.1 + 49223 1.05 0.002526
Target:  5'- cCACAACGAGAAGUUCCGCGCCGCGAUu -3'
miRNA:   3'- -GUGUUGCUCUUCAAGGCGCGGCGCUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.