miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31887 5' -59 NC_006938.1 + 49588 1.08 0.000502
Target:  5'- gAACGCUGCUACAGCCGCUCGCCGAGGg -3'
miRNA:   3'- -UUGCGACGAUGUCGGCGAGCGGCUCC- -5'
31887 5' -59 NC_006938.1 + 7807 0.77 0.101909
Target:  5'- -cUGCUGCUGCAGcCCGUUCaGCCGGGu -3'
miRNA:   3'- uuGCGACGAUGUC-GGCGAG-CGGCUCc -5'
31887 5' -59 NC_006938.1 + 17137 0.72 0.23917
Target:  5'- --aGCUGCUcgaugaccuCGGCCGCUCGCuuguacuggauCGAGGa -3'
miRNA:   3'- uugCGACGAu--------GUCGGCGAGCG-----------GCUCC- -5'
31887 5' -59 NC_006938.1 + 46012 0.71 0.28485
Target:  5'- -gUGCUGCUGaaucaGGCCGCguggGCCGAGa -3'
miRNA:   3'- uuGCGACGAUg----UCGGCGag--CGGCUCc -5'
31887 5' -59 NC_006938.1 + 26066 0.7 0.306443
Target:  5'- --gGCUGCgugGCAGCUGgUCGCgCgGAGGa -3'
miRNA:   3'- uugCGACGa--UGUCGGCgAGCG-G-CUCC- -5'
31887 5' -59 NC_006938.1 + 19793 0.7 0.336355
Target:  5'- cGCGCUGCUAagugGGaCCgugacuaccucaaGCUCGCCGAGu -3'
miRNA:   3'- uUGCGACGAUg---UC-GG-------------CGAGCGGCUCc -5'
31887 5' -59 NC_006938.1 + 52734 0.7 0.33715
Target:  5'- -uCGCUGUUGC-GCCGCUCGaaacccgaCGAGa -3'
miRNA:   3'- uuGCGACGAUGuCGGCGAGCg-------GCUCc -5'
31887 5' -59 NC_006938.1 + 34360 0.69 0.345168
Target:  5'- aGACGCccugGCccUGCGGCuCGUugaccuccgccUCGCCGAGGa -3'
miRNA:   3'- -UUGCGa---CG--AUGUCG-GCG-----------AGCGGCUCC- -5'
31887 5' -59 NC_006938.1 + 50092 0.69 0.361613
Target:  5'- cAACGCUcagGCcGCGaucGUCGC-CGCCGAGGg -3'
miRNA:   3'- -UUGCGA---CGaUGU---CGGCGaGCGGCUCC- -5'
31887 5' -59 NC_006938.1 + 36825 0.69 0.361613
Target:  5'- uGACGCUGCUGCagaAGCUGCaggcaaUCGCCa--- -3'
miRNA:   3'- -UUGCGACGAUG---UCGGCG------AGCGGcucc -5'
31887 5' -59 NC_006938.1 + 18935 0.69 0.370037
Target:  5'- cACGCUGCU-CGGCCG-UCGCUGccgcuucagauGGGa -3'
miRNA:   3'- uUGCGACGAuGUCGGCgAGCGGC-----------UCC- -5'
31887 5' -59 NC_006938.1 + 26182 0.69 0.370037
Target:  5'- --gGuCUGU--CGGCUGCUUGCCGGGGa -3'
miRNA:   3'- uugC-GACGauGUCGGCGAGCGGCUCC- -5'
31887 5' -59 NC_006938.1 + 42507 0.69 0.373444
Target:  5'- aGGCGUcGCUcCGGCCGCgUCggcgaagaacucgacGCCGAGGa -3'
miRNA:   3'- -UUGCGaCGAuGUCGGCG-AG---------------CGGCUCC- -5'
31887 5' -59 NC_006938.1 + 53013 0.68 0.387283
Target:  5'- uAACGCUug-GCAGCuCGCUCGCCGc-- -3'
miRNA:   3'- -UUGCGAcgaUGUCG-GCGAGCGGCucc -5'
31887 5' -59 NC_006938.1 + 7742 0.68 0.414125
Target:  5'- uGugGUgGCcggGCAGCCcuuCUCGCUGAGGa -3'
miRNA:   3'- -UugCGaCGa--UGUCGGc--GAGCGGCUCC- -5'
31887 5' -59 NC_006938.1 + 21555 0.67 0.442081
Target:  5'- cGACGUUGaaGCAGUgGUcccCGCCGAGGu -3'
miRNA:   3'- -UUGCGACgaUGUCGgCGa--GCGGCUCC- -5'
31887 5' -59 NC_006938.1 + 47019 0.67 0.451635
Target:  5'- cGACGCUGCccuggGCGGCCGaaucuUCGa-GAGGa -3'
miRNA:   3'- -UUGCGACGa----UGUCGGCg----AGCggCUCC- -5'
31887 5' -59 NC_006938.1 + 29767 0.67 0.471074
Target:  5'- --aGCaGCUacgacaugGCAGCCauccgGCUCgGCCGAGGg -3'
miRNA:   3'- uugCGaCGA--------UGUCGG-----CGAG-CGGCUCC- -5'
31887 5' -59 NC_006938.1 + 55396 0.67 0.471074
Target:  5'- -uUGCaGCaguCGGCgCGCUCGCCGcAGGc -3'
miRNA:   3'- uuGCGaCGau-GUCG-GCGAGCGGC-UCC- -5'
31887 5' -59 NC_006938.1 + 29918 0.67 0.490928
Target:  5'- -cCGCUGacagACAGCgGUaUCGCgGAGGg -3'
miRNA:   3'- uuGCGACga--UGUCGgCG-AGCGgCUCC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.