miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31888 3' -59.1 NC_006938.1 + 30170 0.66 0.506234
Target:  5'- uGGGaCUcGGCAUggUCCGGCUCUCGa-- -3'
miRNA:   3'- -UCC-GA-CCGUAggAGGUCGAGAGCguc -5'
31888 3' -59.1 NC_006938.1 + 51278 0.67 0.427698
Target:  5'- cAGGCcggUGGCGcguUCCgCCAGCUCgccacgaccgUGCAGg -3'
miRNA:   3'- -UCCG---ACCGU---AGGaGGUCGAGa---------GCGUC- -5'
31888 3' -59.1 NC_006938.1 + 44826 0.68 0.41839
Target:  5'- cAGGCUGGCGgcaaUCaCUCaauGCgcaUCGCAGa -3'
miRNA:   3'- -UCCGACCGU----AG-GAGgu-CGag-AGCGUC- -5'
31888 3' -59.1 NC_006938.1 + 15361 0.68 0.409207
Target:  5'- cGGCUGGCGcuggcggacguUCUUcgacuucgaCCAGCUCUCcuggGCAGu -3'
miRNA:   3'- uCCGACCGU-----------AGGA---------GGUCGAGAG----CGUC- -5'
31888 3' -59.1 NC_006938.1 + 32132 0.68 0.373761
Target:  5'- uGGGCUGGgcUCC-CCuGCccggCUCGCAGa -3'
miRNA:   3'- -UCCGACCguAGGaGGuCGa---GAGCGUC- -5'
31888 3' -59.1 NC_006938.1 + 3787 0.68 0.373761
Target:  5'- aAGGgUGGCAUCgC-CCGGCacgcggUCUCGCGu -3'
miRNA:   3'- -UCCgACCGUAG-GaGGUCG------AGAGCGUc -5'
31888 3' -59.1 NC_006938.1 + 45521 0.69 0.365231
Target:  5'- uGGCagcgaaGGCGaagCCUCCAGCUCccgaGCAGa -3'
miRNA:   3'- uCCGa-----CCGUa--GGAGGUCGAGag--CGUC- -5'
31888 3' -59.1 NC_006938.1 + 52142 0.69 0.356836
Target:  5'- -aGCUGGCAgCCaaCCAGCUCcUGCAGc -3'
miRNA:   3'- ucCGACCGUaGGa-GGUCGAGaGCGUC- -5'
31888 3' -59.1 NC_006938.1 + 48743 0.69 0.340457
Target:  5'- aAGGCUGGCAUCgugauggacaUCCcGCUCaUCGCc- -3'
miRNA:   3'- -UCCGACCGUAGg---------AGGuCGAG-AGCGuc -5'
31888 3' -59.1 NC_006938.1 + 59593 0.7 0.301926
Target:  5'- gAGGCUGGCAUCCgccgcgCCAGacaggUUCGUc- -3'
miRNA:   3'- -UCCGACCGUAGGa-----GGUCga---GAGCGuc -5'
31888 3' -59.1 NC_006938.1 + 30738 0.71 0.253763
Target:  5'- uGGGCgagugggagGGCGUCCUgCAgGCUCagGCAGa -3'
miRNA:   3'- -UCCGa--------CCGUAGGAgGU-CGAGagCGUC- -5'
31888 3' -59.1 NC_006938.1 + 7509 0.74 0.173194
Target:  5'- uGGCUGGCAUCCggccacucccccauaUuCCGGCUCUucggcuaCGCGGg -3'
miRNA:   3'- uCCGACCGUAGG---------------A-GGUCGAGA-------GCGUC- -5'
31888 3' -59.1 NC_006938.1 + 35126 0.74 0.167289
Target:  5'- cAGGgaGGCGUCCUCCuccuGGaUCUUGCGGa -3'
miRNA:   3'- -UCCgaCCGUAGGAGG----UCgAGAGCGUC- -5'
31888 3' -59.1 NC_006938.1 + 50724 1.09 0.000422
Target:  5'- cAGGCUGGCAUCCUCCAGCUCUCGCAGg -3'
miRNA:   3'- -UCCGACCGUAGGAGGUCGAGAGCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.