miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31888 5' -62.5 NC_006938.1 + 46504 0.66 0.419514
Target:  5'- aGUCuCGGaGGaGCUGauCGGCGGCGGGa -3'
miRNA:   3'- -CAG-GCC-CCgUGACgcGCCGCUGCUCg -5'
31888 5' -62.5 NC_006938.1 + 16310 0.66 0.419514
Target:  5'- gGUCCGGguGGCAgUGCuGCGGaaacagGACcAGCg -3'
miRNA:   3'- -CAGGCC--CCGUgACG-CGCCg-----CUGcUCG- -5'
31888 5' -62.5 NC_006938.1 + 37275 0.66 0.393346
Target:  5'- gGUCCGuGGaGCAUaUGCccaugggaGCGGCGGCGcuaguGGCg -3'
miRNA:   3'- -CAGGC-CC-CGUG-ACG--------CGCCGCUGC-----UCG- -5'
31888 5' -62.5 NC_006938.1 + 33268 0.66 0.393346
Target:  5'- gGUCCGGGcuGCACcGUGCGG-GuCGGGa -3'
miRNA:   3'- -CAGGCCC--CGUGaCGCGCCgCuGCUCg -5'
31888 5' -62.5 NC_006938.1 + 845 0.66 0.393346
Target:  5'- cUCCGGaGGCACacucgagcaaGCGCccaaGACGAGCa -3'
miRNA:   3'- cAGGCC-CCGUGa---------CGCGccg-CUGCUCG- -5'
31888 5' -62.5 NC_006938.1 + 43469 0.66 0.388241
Target:  5'- -aUCGaGGGCcgugugccauacauCUGUGUGGUGGCGGGUg -3'
miRNA:   3'- caGGC-CCCGu-------------GACGCGCCGCUGCUCG- -5'
31888 5' -62.5 NC_006938.1 + 7536 0.66 0.3765
Target:  5'- uUCCGGcucuucGGCua--CGCGGgGACGGGCa -3'
miRNA:   3'- cAGGCC------CCGugacGCGCCgCUGCUCG- -5'
31888 5' -62.5 NC_006938.1 + 49360 0.67 0.355339
Target:  5'- -gCUGGGGCAC-GCGCccucugaucgacgauGaCGGCGAGCc -3'
miRNA:   3'- caGGCCCCGUGaCGCG---------------CcGCUGCUCG- -5'
31888 5' -62.5 NC_006938.1 + 48217 0.67 0.344296
Target:  5'- gGUCCaGucagaGGUGCUGCGUGGCGccaucgucaACGAGUu -3'
miRNA:   3'- -CAGGcC-----CCGUGACGCGCCGC---------UGCUCG- -5'
31888 5' -62.5 NC_006938.1 + 48412 0.67 0.344296
Target:  5'- -gCCGGGGUucaggccgucacGCUGCuCGuuguuggucGCGAUGAGCg -3'
miRNA:   3'- caGGCCCCG------------UGACGcGC---------CGCUGCUCG- -5'
31888 5' -62.5 NC_006938.1 + 20931 0.68 0.306182
Target:  5'- gGUCuCGGGccaccucGCGCUgugucuugcccGCGCGGCGGCG-GUa -3'
miRNA:   3'- -CAG-GCCC-------CGUGA-----------CGCGCCGCUGCuCG- -5'
31888 5' -62.5 NC_006938.1 + 55510 0.68 0.279276
Target:  5'- aUCUGGGGCGagaagcccagGcCGCcuGCGGCGAGCg -3'
miRNA:   3'- cAGGCCCCGUga--------C-GCGc-CGCUGCUCG- -5'
31888 5' -62.5 NC_006938.1 + 37899 0.69 0.272687
Target:  5'- -aCUGGuGGC-CcGCGUcucagGGCGGCGAGCg -3'
miRNA:   3'- caGGCC-CCGuGaCGCG-----CCGCUGCUCG- -5'
31888 5' -62.5 NC_006938.1 + 16276 0.7 0.235755
Target:  5'- -gCCGGaGCGCUGgGuCGGCGAC-AGCc -3'
miRNA:   3'- caGGCCcCGUGACgC-GCCGCUGcUCG- -5'
31888 5' -62.5 NC_006938.1 + 63332 0.7 0.232302
Target:  5'- -cUCGcGGCAcCUGCcgaagguuccgaaggGCGGCGGCGAGCc -3'
miRNA:   3'- caGGCcCCGU-GACG---------------CGCCGCUGCUCG- -5'
31888 5' -62.5 NC_006938.1 + 30856 0.7 0.224411
Target:  5'- cUCUGGGGCACUGgcCGCcGaCGAcccCGAGCa -3'
miRNA:   3'- cAGGCCCCGUGAC--GCGcC-GCU---GCUCG- -5'
31888 5' -62.5 NC_006938.1 + 37676 0.7 0.218915
Target:  5'- --gCGGGGCcguCUGgGUGGCGAUGGuGCc -3'
miRNA:   3'- cagGCCCCGu--GACgCGCCGCUGCU-CG- -5'
31888 5' -62.5 NC_006938.1 + 41592 0.78 0.063592
Target:  5'- cGUCagcaGGGaGCgGCUGCGCGGCGGCcuGGGCa -3'
miRNA:   3'- -CAGg---CCC-CG-UGACGCGCCGCUG--CUCG- -5'
31888 5' -62.5 NC_006938.1 + 53118 0.78 0.05701
Target:  5'- -aCCGuGGuGCcagACUGCGCGGCGAgCGAGCu -3'
miRNA:   3'- caGGC-CC-CG---UGACGCGCCGCU-GCUCG- -5'
31888 5' -62.5 NC_006938.1 + 50758 1.1 0.000209
Target:  5'- cGUCCGGGGCACUGCGCGGCGACGAGCu -3'
miRNA:   3'- -CAGGCCCCGUGACGCGCCGCUGCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.