miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31889 5' -64.4 NC_006938.1 + 14241 0.66 0.330402
Target:  5'- cAGGCGGCCgGAGGGUgcuccgucuggcgcaCUcacaaGGuccacaacGCCGGGGCa -3'
miRNA:   3'- -UCCGCCGG-CUCCCG---------------GA-----CC--------UGGCUCUG- -5'
31889 5' -64.4 NC_006938.1 + 33075 0.66 0.327403
Target:  5'- aGGGUGGCCGAGuGGUaUGG-CUGGcGCa -3'
miRNA:   3'- -UCCGCCGGCUC-CCGgACCuGGCUcUG- -5'
31889 5' -64.4 NC_006938.1 + 45665 0.66 0.327403
Target:  5'- cGGGaGGCCGAGaacGGCUggagcGGACUGAGcCa -3'
miRNA:   3'- -UCCgCCGGCUC---CCGGa----CCUGGCUCuG- -5'
31889 5' -64.4 NC_006938.1 + 58578 0.66 0.325167
Target:  5'- gGGGCGcucGUgGAuGGCCUGGGCacugucccccugggCGAGACg -3'
miRNA:   3'- -UCCGC---CGgCUcCCGGACCUG--------------GCUCUG- -5'
31889 5' -64.4 NC_006938.1 + 26662 0.66 0.312711
Target:  5'- --aCGG-CGAGGGCCgcUGGACCGcGAUc -3'
miRNA:   3'- uccGCCgGCUCCCGG--ACCUGGCuCUG- -5'
31889 5' -64.4 NC_006938.1 + 9779 0.66 0.305555
Target:  5'- -cGCGGCCGAGGcGCUcGGaauGCCGuacGGCu -3'
miRNA:   3'- ucCGCCGGCUCC-CGGaCC---UGGCu--CUG- -5'
31889 5' -64.4 NC_006938.1 + 45903 0.66 0.303433
Target:  5'- cGGCGGCuuCGAGGuCCUGaucggagccucggcGGCgGAGACg -3'
miRNA:   3'- uCCGCCG--GCUCCcGGAC--------------CUGgCUCUG- -5'
31889 5' -64.4 NC_006938.1 + 11415 0.66 0.298525
Target:  5'- cGGCGGCCGAGuaCUUGaagucguucGACCGAGu- -3'
miRNA:   3'- uCCGCCGGCUCccGGAC---------CUGGCUCug -5'
31889 5' -64.4 NC_006938.1 + 8078 0.66 0.291622
Target:  5'- cGGGCGGgaGcuGGGCCgGGucGCCGAGcACg -3'
miRNA:   3'- -UCCGCCggCu-CCCGGaCC--UGGCUC-UG- -5'
31889 5' -64.4 NC_006938.1 + 41584 0.67 0.271661
Target:  5'- gGGaGCGGCUGcgcGGcGGCCUGGGcaaaguccCCGAcGACg -3'
miRNA:   3'- -UC-CGCCGGC---UC-CCGGACCU--------GGCU-CUG- -5'
31889 5' -64.4 NC_006938.1 + 29791 0.68 0.229372
Target:  5'- cGGCucGGCCGAgGGGCCagcccGGACC-AGAUc -3'
miRNA:   3'- uCCG--CCGGCU-CCCGGa----CCUGGcUCUG- -5'
31889 5' -64.4 NC_006938.1 + 21759 0.69 0.19278
Target:  5'- -uGCGuGC--AGGGCCUGGACCcGGACa -3'
miRNA:   3'- ucCGC-CGgcUCCCGGACCUGGcUCUG- -5'
31889 5' -64.4 NC_006938.1 + 17652 0.69 0.19278
Target:  5'- cGGCua-CGAccuggacuGGGCCUGGGCCGAGGg -3'
miRNA:   3'- uCCGccgGCU--------CCCGGACCUGGCUCUg -5'
31889 5' -64.4 NC_006938.1 + 6820 0.69 0.187991
Target:  5'- cGGUcgacaaGGCCGAGGGCuCUucggaGGACgGAGAg -3'
miRNA:   3'- uCCG------CCGGCUCCCG-GA-----CCUGgCUCUg -5'
31889 5' -64.4 NC_006938.1 + 47928 0.7 0.178726
Target:  5'- uAGGCGGUgaUGAcacGGGCCU-GACCGGuGACg -3'
miRNA:   3'- -UCCGCCG--GCU---CCCGGAcCUGGCU-CUG- -5'
31889 5' -64.4 NC_006938.1 + 55657 0.7 0.174247
Target:  5'- gAGGCGGCaaGGGcGGCCUGGGagGAGGg -3'
miRNA:   3'- -UCCGCCGg-CUC-CCGGACCUggCUCUg -5'
31889 5' -64.4 NC_006938.1 + 31856 0.7 0.165589
Target:  5'- -cGCGGUCGAGGGuguCCUGGAgCCGGucguGGCa -3'
miRNA:   3'- ucCGCCGGCUCCC---GGACCU-GGCU----CUG- -5'
31889 5' -64.4 NC_006938.1 + 7576 0.71 0.141891
Target:  5'- uGGCcaagcaccuGGCCGAGGGCgUcucGGGCCGAGu- -3'
miRNA:   3'- uCCG---------CCGGCUCCCGgA---CCUGGCUCug -5'
31889 5' -64.4 NC_006938.1 + 23237 0.71 0.141891
Target:  5'- uGGGCGGacccuUCGAGuGGUCgGcGACCGAGGCg -3'
miRNA:   3'- -UCCGCC-----GGCUC-CCGGaC-CUGGCUCUG- -5'
31889 5' -64.4 NC_006938.1 + 30591 0.72 0.12786
Target:  5'- aGGGCGGCUacaAGGGCUggGaGACCGAGGa -3'
miRNA:   3'- -UCCGCCGGc--UCCCGGa-C-CUGGCUCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.